Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2724 ATGGCGGAGGAGGAATCGGCTTCGTCTCCAACTGTGTTGAGCATGGAGGTTCTTGACGATGTGGAGGACTACGCTTTGGTCTATGAACCGGAGGATTTGACAAGGCAAACGTACCTTCATGTTTATGAACTTGTGCAGAATGGCAATGCGGCATTTCGGAATAACCATATGGAAGAGGCCATCAACCTTTACTCTAGAGCAAATAGCATCAGGACTGGTGATCCTGTTATACTTAGCAACCGAAGTGCTGCTTACATCAGGATTAGCCAATTCTTAAAACACAGGCCTCCATCAGCTTCAGAATATAGTCCGTTGAGTGGGCTGGATCCTACAACACATGCTGAACTTGGTTTGAGGGATGCTGAGAAGCTTGTCAACATCCGAAGTGGTTCAGCAAAATCATACCTTTTAAAGGCCAATGCTCTTTTTCTGTTGGAGAAATATGAGATGGCTCGTGATGTTATTCTTTCAGGTCTTCAGGTTGATCCATATAGTAATTCTCTCCGGGTGTCTCTTTCAAATCTGGAAAGAGCACTGGCTAGTTTGGCAAGGATGAGTACACATGGACAGCCAGAGCGCACTGATGATTTTGACTGCACTCTTTGCCTCAAGTTACTTTATGAACCTGTTACAACCCCCTGTGGACATTCTTTTTGCCGGTCTTGTCTATTTCAGTCAATGGACCGTGGCAACAGGTGCCCATTGTGCAGGACAGTTCTGTTTATTGGTCCAAGAACATGTTCTATCAGTGTGACATTGAAAAACATTATACAAAAGAACTTTCCGGAGGAATATGCTGAAAGGAAGGAAGAGAATGACAGTTTGACCAACTTGGGCTTAGATTTGATCCCTCTTTTTGTCATGGATGTTGTCATTCCATGTCAAAAGTTCCCACTCCATATATTTGAACCTCGTTATAGACTGATGGTGAGTTCGTCTATAGATGTTGATTGTTGTGGAGGTTTGAATTTTACATACATCTTGAATGTCAAGTAA 996 0.4297 MAEEESASSPTVLSMEVLDDVEDYALVYEPEDLTRQTYLHVYELVQNGNAAFRNNHMEEAINLYSRANSIRTGDPVILSNRSAAYIRISQFLKHRPPSASEYSPLSGLDPTTHAELGLRDAEKLVNIRSGSAKSYLLKANALFLLEKYEMARDVILSGLQVDPYSNSLRVSLSNLERALASLARMSTHGQPERTDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDRGNRCPLCRTVLFIGPRTCSISVTLKNIIQKNFPEEYAERKEENDSLTNLGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVSSSIDVDCCGGLNFTYILNVK 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2724 331 SUPERFAMILY PUA domain-like 283 314 IPR015947 -
Alju06g2724 331 SUPERFAMILY TPR-like 42 179 IPR011990 GO:0005515
Alju06g2724 331 Gene3D Tetratricopeptide repeat domain 40 178 IPR011990 GO:0005515
Alju06g2724 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 278 IPR013083 -
Alju06g2724 331 PANTHER RING FINGER PROTEIN 127 36 311 - -
Alju06g2724 331 SMART ring_2 199 236 IPR001841 -
Alju06g2724 331 SUPERFAMILY RING/U-box 193 262 - -
Alju06g2724 331 ProSitePatterns Zinc finger RING-type signature. 214 223 IPR017907 -
Alju06g2724 331 CDD RING-HC_LONFs_rpt2 196 240 - -
Alju06g2724 331 Gene3D - 281 325 IPR046336 -
Alju06g2724 331 ProSiteProfiles Zinc finger RING-type profile. 199 237 IPR001841 -
Alju06g2724 331 Pfam Zinc finger, C3HC4 type (RING finger) 199 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2724 Alju-ChrAlju06 54232444 54236608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2724 187 240 C3H Transcription Factor Family AT1G74990 35.088 7.97e-09 52.0