Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2720 ATGGAGATTGGAGGCTTTGATTTGAACAAAGTATATGCTAATGCTGGAAATCCTAGCAAGAGGACTGATGATTTCATTGATAGAAGCAAGGTGAAAATATTGCTGTGCGATAATGATACCAAGAGTTCGGAAGAGGTTTTAACCCTTCTTTCCCGATGTTCTTATCAAGTTATTTCAGTAAGCTCGCCAAGGCAGGCAATTGATGTACTGAATGCAGAGGCGCAAGATATTGATATCATACTTGCTGAAGTTGACCTTCCAATGAAGAAAGGCATGAAGATGTTGAAGTACATTGCACGAAACAAAGATTTGCATCGAATTCCTGTTATAATGATGTCGGCACACGATGAAGTATCCATTGTTATGAAGTGTTTGAGACTTGGAGCTGCAGAGTATCTAATAAAGCCTTTACGCTCTAATGAACTATTAAATTTGTGGACACACATGTGGAGAAGGAGGCGCATGCTTGGTCTGACAGAGAAGAACATAATGAATTATAATTCTGATCTAGTAGCATCAGCCATAATGAACTATGATTCTGATCTGGTAGCATCAGACCCTGGAGATGGTAATGGTAATACAGCCAGTACCGCCTTGTTCTCAGATGATACAGAAGACAAGTCCGACAGAAGCACTAATCCAGAGATAGGAATGTCAATCCAGCTGCAACATGAGTCTACAGCTGCTGCTGCTGCTCCTGAGGAGCCTCCAGGTGCTCATGCATCAAAGTATGGGCCTGATGTGCCTGGAATTAGTGATCGCCAGACAAGACACTGTTCTTCAGGACCAAAGAAGAGTGGACTGAGGATTGGGGAGTCATCGGCGTTCTTTAGTTATGTTAAAACAACCATGCAAAAGAGCAACTTACAAGGGATTCCTCAAGTTCAGAATAATGCTGCTACGCAACAGAGGATGGAAGACATGCGTCAAACTTGTCCTTATGGGGTTCATAACCTTACAACACATGAAAACGGAGAGCCGAGTGAGAGACCTAATAAAGATGATTTACCCAGCAGCATTAGTAATCCTGATTCTTTCTCCGCTGACAATTCTTCTGCTCCACCTGCATCCATGGGAATTATAAATCAAAAGAACTTGAATCAAGAACATTTACGACAAGATGTCACCCATCTTAGAAATGGAACTCATATTTCTGAGACTCAGATACCTGGTACTCCTTCCCAACATCCTCATCTATATTATATTTCAGGGTTCTTCAATCACCTTCCGATGCCATCCTCAGCGCCATTGTATCCTAAGAATCACCAGGACCCCCAGAATCATGCTAGTGCAACTATGATTGCACGGTACAATGGCATTTCCCATCGTCCTCCTGATGCGAATGGGATCACTTCCTTCCCATATCACCCAATGACTGTATGCTTACAACCCGGTCAGCTGTCCTCAGCTCATTCACGGCCATCATTTGGAAGTTCAAGTTCATCCAAAGCAAAACTAAGTATAGTTGATAGAAGAGCAGAAGCATTGATTAAGTTTAGAAAGAAAAGGAGAGAACGATGCTTTGATAAGAAAATTAGGTATGTCAATCGAAAGCAGCTTGCTGAAAGGCGACCTCGCGTGAGGGGACAGTTTGTGAAAAAGTTGAATGGAGTTAATGTTGATCTCAATGGACAACCTGCTTCCGTTGAATATGATGAAGAGGAGGAGGAGGACGACGACGAAGAGAACAATGTGAGAGATTCATCTCCTGAAGATGCTTGA 1722 0.4251 MEIGGFDLNKVYANAGNPSKRTDDFIDRSKVKILLCDNDTKSSEEVLTLLSRCSYQVISVSSPRQAIDVLNAEAQDIDIILAEVDLPMKKGMKMLKYIARNKDLHRIPVIMMSAHDEVSIVMKCLRLGAAEYLIKPLRSNELLNLWTHMWRRRRMLGLTEKNIMNYNSDLVASAIMNYDSDLVASDPGDGNGNTASTALFSDDTEDKSDRSTNPEIGMSIQLQHESTAAAAAPEEPPGAHASKYGPDVPGISDRQTRHCSSGPKKSGLRIGESSAFFSYVKTTMQKSNLQGIPQVQNNAATQQRMEDMRQTCPYGVHNLTTHENGEPSERPNKDDLPSSISNPDSFSADNSSAPPASMGIINQKNLNQEHLRQDVTHLRNGTHISETQIPGTPSQHPHLYYISGFFNHLPMPSSAPLYPKNHQDPQNHASATMIARYNGISHRPPDANGITSFPYHPMTVCLQPGQLSSAHSRPSFGSSSSSKAKLSIVDRRAEALIKFRKKRRERCFDKKIRYVNRKQLAERRPRVRGQFVKKLNGVNVDLNGQPASVEYDEEEEEDDDEENNVRDSSPEDA 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2720 573 Gene3D - 31 234 - -
Alju06g2720 573 ProSiteProfiles Response regulatory domain profile. 32 150 IPR001789 GO:0000160
Alju06g2720 573 ProSiteProfiles CCT domain profile. 492 534 IPR010402 GO:0005515
Alju06g2720 573 MobiDBLite consensus disorder prediction 186 267 - -
Alju06g2720 573 MobiDBLite consensus disorder prediction 334 359 - -
Alju06g2720 573 SUPERFAMILY CheY-like 29 157 IPR011006 -
Alju06g2720 573 MobiDBLite consensus disorder prediction 541 573 - -
Alju06g2720 573 MobiDBLite consensus disorder prediction 548 573 - -
Alju06g2720 573 SMART REC_2 31 146 IPR001789 GO:0000160
Alju06g2720 573 Pfam CCT motif 492 534 IPR010402 GO:0005515
Alju06g2720 573 PANTHER TWO-COMPONENT RESPONSE REGULATOR 31 292 IPR045279 GO:0009736
Alju06g2720 573 MobiDBLite consensus disorder prediction 187 201 - -
Alju06g2720 573 Pfam Response regulator receiver domain 33 144 IPR001789 GO:0000160
Alju06g2720 573 MobiDBLite consensus disorder prediction 315 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2720 Alju-ChrAlju06 54193647 54197417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2720 20 572 Response Regulator Gene Family AT5G61380 44.288 9.45e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Pseudo ARR-B Alju06g2720 Response_reg 4.3e-18 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2720 06 54193647 54197417 Alju06g2720 06 54193647 54197417 ECH