LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g2696	ATGGGGAGACCTCCTTGCTGTGACAAAATAGGGGTGAAGAAAGGACCCTGGACTCCTGAAGAAGACATCGTATTGGTCTCTTACATTCAAGAACACGGCCCTGGCAACTGGAGATCAGTTCCCACCAATACCGGTTTGATGAGATGCAGTAAAAGCTGCCGACTCCGATGGACCAACTATCTCCGGCCCGGCATCAAACGCGGCAACTTCACTGAGCATGAGGAGAAGATGATCATCCACCTTCAAGCCCTTCTCGGAAATAGGTGGGCGGCCATAGCATCTTATCTTCCACAGAGAACAGACAATGACATCAAGAATTACTGGAACACCCATCTCAAGAAGAAGCTCATGATGGACAAGGGAGCAGCAGAAAATGGCGGCAGCGGTAACGATCAGGAAGACGGTGTATATTTATCCACGTCATCATCTTCACAACCAAACAAGGGTCAGTGGGAAAGAAGGCTTCAAACTGATATCCACATGGCCAAACAAGCCCTATGTGAAGCTCTCTCCATTGACAAGCCCTCTCCTTATAATAATAACAATTTCCCTGTGATCTCTGACACTACTCATAATAATAAGCCCTCGTTTTCCTTCAGCCCTATCAACACCACCACAAAATTACCTGACCAAGCACATGGGACAGCAGTATCATCGTACGCGTCGAGTGCCGATAATATAGCTCGGCTTCTGCAAAATTGGATGGCGAAGAAGACGACGCCAATAAACTCAGTATCCGGTTCGACTTCGAGCGAAGGAGCGCAGAGTGGGAGTGGGACCAGTACCACAACACCAGATCAGGGCTTTGACTATTGTTCTCTCTTGAGCTCTAACAACAACAACAACAACAATCACAATTCTGATGTGTCTACAGAGAGTAATAGCCTGTTACAAGAAGAGACCAAGCCAAGTTTGGAAACTCACAATCACAATCACAATCACAATCACATGCCTTTCACGTTTCTGGAGAATTGGCTTTTTGATGATGCAGCAGCTCCACAAGGCCATGAAGATTTGTTGACCATGTCTCTTCAGGATACTACACCTGACCTATTTCAGACTCATCATCATCAGTTGGCAAAGCAGAAATTCTAG	1095	0.4639	MGRPPCCDKIGVKKGPWTPEEDIVLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFTEHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLMMDKGAAENGGSGNDQEDGVYLSTSSSSQPNKGQWERRLQTDIHMAKQALCEALSIDKPSPYNNNNFPVISDTTHNNKPSFSFSPINTTTKLPDQAHGTAVSSYASSADNIARLLQNWMAKKTTPINSVSGSTSSEGAQSGSGTSTTTPDQGFDYCSLLSSNNNNNNNHNSDVSTESNSLLQEETKPSLETHNHNHNHNHMPFTFLENWLFDDAAAPQGHEDLLTMSLQDTTPDLFQTHHHQLAKQKF	364

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g2696	364	CDD	SANT	69	112	IPR001005	-
	Alju06g2696	364	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Alju06g2696	364	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Alju06g2696	364	CDD	SANT	16	61	IPR001005	-
	Alju06g2696	364	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	282	-	-
	Alju06g2696	364	FunFam	MYB-related transcription factor	13	66	-	-
	Alju06g2696	364	MobiDBLite	consensus disorder prediction	241	309	-	-
	Alju06g2696	364	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Alju06g2696	364	MobiDBLite	consensus disorder prediction	132	151	-	-
	Alju06g2696	364	Gene3D	-	13	66	-	-
	Alju06g2696	364	MobiDBLite	consensus disorder prediction	241	302	-	-
	Alju06g2696	364	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Alju06g2696	364	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Alju06g2696	364	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Alju06g2696	364	MobiDBLite	consensus disorder prediction	121	151	-	-
	Alju06g2696	364	Gene3D	-	69	135	-	-
	Alju06g2696	364	SMART	sant	66	114	IPR001005	-
	Alju06g2696	364	SMART	sant	13	63	IPR001005	-
	Alju06g2696	364	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g2696	Alju-ChrAlju06	53986923	53988430	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g2696	1	344	MYB Transcription Factor Family	AT5G62470	52.632	3.27e-111	327

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju06g2696		Myb_DNA-binding	5.3e-14	CL0123