LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g2678	ATGGGAAATTGCTTTCGACACCGTCCCAAGCCTGACGATACTAAAATCCCCTCTCACCCTATTTCCTGTTCTACACAGGTTTCTGTCAAAAGCACCCATCCCTATGCTCATTCGAGTCCAGTGAAAGGAGCCAAACCGCAGACACTCCCTACTCCAAGATTGGAAGGTGTCTTACTATCCTCTCTGCATCTGAAAGCCTTCACATTCAATGAACTTAAGGATATTACTAGAAACTTTTGTCCTGATAATCTACTGGGAGAAGGTGGATTTGGTAAAGTTTACAAGGCGTGGATTGATGAACAGTCTTTTGGACCTGCAAGTCCTGAATCTGGAATGGCTGTAGCTGTAAAGAAGCTTAAGTGTAATGGTTTTCAAGGACACAAGGAGTGGCTGTCTGAACTTAATTATCTTGGTCAACTTCATCACCCAAATCTTGTTAAACTTCTTGGGTTCTGCATCGACGGGGATAGCCGGCTTCTGGTATACGAGTACATGCCCAAAGGCAGCTTGGAGACTCATCTATTTCGCAGGGGTGCACAACCACTTCCTTGGGCAACAAGGATCAAAGTTGCTATTGGTGCTGCTCGAGGCCTCACCTTCCTCCATGACTCCGACCAACAAGTTATCTACCGTGACTTCAAGGCTTCTAACATCTTATTAGATTCGGAGTTTAATGCAAAACTCTCAGACTTTGGTTTTGCCAAAGCAGGGCCCACCGGGGATCGTACTCATGTTTCCACTCAAGTCCTTGGTACTCATGGCTATGCTGCTCCTGAATATATTCTCACAGGTTGGTTGACGGCAAGGTGTGATGTTTATAGCTTTGGGGTTGTGCTATTGGAACTACTCTCAGGACGCCGTGCCATTGATCGAACAAAATCCGGAGTTGAACAGAATCTGGTAGATTGGTCAAGACCATATTTGGGTGATAGGAGGAAGTTATTCAGGATAATGGACACCAAGTTAGAAGGCCAGTATCCACAGAAGGCAGCTTATACAGCAGCAATTCTTGCTCTGCAGTGCATCAGTGAGGCCAAAATCAGACCCCAAATGTCTGAAGTTCTGGCTGCTCTTGAACAGCTTCAACAGGCCAAAACCTCAGCTAGTTCATCATCAAGATCCAGAGCAGAGAGTAGTAGCCCCTCCTTAAGCCCCGAGCGAGGTCATACAGACACATCATCATCATTGAGACAAAATCATTATTCAACAGAGAAAGGTTTCATCTCCAGTCAATTAACTGAGAGCACTGTAAGATCCCCTGTTAAATCTGATCCCAAAGAACAGTGTGACCAGATTGGAAATCCTCTTCATGTGGATCCCATCACTACATAG	1332	0.4535	MGNCFRHRPKPDDTKIPSHPISCSTQVSVKSTHPYAHSSPVKGAKPQTLPTPRLEGVLLSSLHLKAFTFNELKDITRNFCPDNLLGEGGFGKVYKAWIDEQSFGPASPESGMAVAVKKLKCNGFQGHKEWLSELNYLGQLHHPNLVKLLGFCIDGDSRLLVYEYMPKGSLETHLFRRGAQPLPWATRIKVAIGAARGLTFLHDSDQQVIYRDFKASNILLDSEFNAKLSDFGFAKAGPTGDRTHVSTQVLGTHGYAAPEYILTGWLTARCDVYSFGVVLLELLSGRRAIDRTKSGVEQNLVDWSRPYLGDRRKLFRIMDTKLEGQYPQKAAYTAAILALQCISEAKIRPQMSEVLAALEQLQQAKTSASSSSRSRAESSSPSLSPERGHTDTSSSLRQNHYSTEKGFISSQLTESTVRSPVKSDPKEQCDQIGNPLHVDPITT	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g2678	443	MobiDBLite	consensus disorder prediction	1	15	-	-
	Alju06g2678	443	CDD	STKc_IRAK	85	361	-	-
	Alju06g2678	443	SUPERFAMILY	Protein kinase-like (PK-like)	54	358	IPR011009	-
	Alju06g2678	443	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	208	220	IPR008271	GO:0004672\|GO:0006468
	Alju06g2678	443	FunFam	Serine/threonine-protein kinase BIK1	47	164	-	-
	Alju06g2678	443	Pfam	Protein tyrosine and serine/threonine kinase	83	354	IPR001245	GO:0004672\|GO:0006468
	Alju06g2678	443	Gene3D	Transferase(Phosphotransferase) domain 1	165	383	-	-
	Alju06g2678	443	MobiDBLite	consensus disorder prediction	1	21	-	-
	Alju06g2678	443	MobiDBLite	consensus disorder prediction	365	443	-	-
	Alju06g2678	443	MobiDBLite	consensus disorder prediction	365	419	-	-
	Alju06g2678	443	ProSitePatterns	Protein kinases ATP-binding region signature.	85	118	IPR017441	GO:0005524
	Alju06g2678	443	ProSiteProfiles	Protein kinase domain profile.	79	361	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju06g2678	443	FunFam	Serine/threonine-protein kinase PBS1	165	377	-	-
	Alju06g2678	443	PANTHER	OS01G0588500 PROTEIN-RELATED	58	362	-	-
	Alju06g2678	443	Gene3D	Phosphorylase Kinase; domain 1	60	164	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g2678	Alju-ChrAlju06	53806990	53809862	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g2678	58	358	Glycoside Hydrolase	AT3G07070	52.459	1.43e-105	317

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VIIa-2	Alju06g2678		PK_Tyr_Ser-Thr	7.1e-44	CL0016