Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2651 ATGACGACGGGCGGGAGGGTCCTTATGGGTTCTCTTACTAATGCTTCCAATTTAGGTATTTTGCTTCAAAATCAAGCCGCTCCTTCCTCTTCTGACTCTCTCGATGCCTTTTTCCTTTCTGGCTCTTCCGCTTCTTTCCTCGATTCAAGATCCATGGTGAGCTTTGAAGATGTTAAACCAGGGAAAGGATGTAATCGTTCATTCTTTAGCCCTTTTGATCATGATGAAAATGGAGATGAAGATTTGGATGAATACTTTCATCAACCTGAGAAGAAGAGGCGGCTGACCGCCGATCAAGTCCAGTTTCTTGAGAAAAGCTTTGAGGTAGAGAACAAGCTTGAACCAGAGAGGAAAGTTCAACTAGCCAAGGAGGTTGGCTTGCAGCCTCGGCAAGTTGCCATTTGGTTCCAGAACCGCCGCGCACGATGGAAGACAAAACAGCTGGAGAAGGATTTTGGATCTCTGCAGGCTAGTTATGACAGTCTCAAAGCTGACTATGATAATCTTCTCAAGGAGAAAGATAAACTAAAAGCTGAGGTTGCAAATCTCACAGAGGAGGTGCTTCTTAGAGAGAAACAAGAGGGAAACTTCAATCAGGAAGACAAGAGCAAAGGTAAAGAACCAGAACAAGCGCAAAAGCCCTTGTTGGACACTTGTTCTGATGGTGAAGGTTCCAAAGTCTCTGTTGGGGCATGCAAACAGGAAGACGTGTGTTCAGCCAAGAGTGACATATTTGATGCAGATAGCCCCCATTACACTGATGGAGTTCACTCTGCGCTGCTGGAACCTGGGGATTCCTCCTATGTATTTGAACCTGATCAGTCAGATTTATCTCAGGATGAAGGAGATAACTTGAGCAAGAACTTGTTTCCTCAATATATATTCCCCAAGCTTGAACACGTTGACTACTCTGACCCATCCAAAAGTTCATACAGTTTTGGATTCCCAGCTGAAGATCATGATGCCTTTTGGTCCTGGTCTTACTAG 987 0.4468 MTTGGRVLMGSLTNASNLGILLQNQAAPSSSDSLDAFFLSGSSASFLDSRSMVSFEDVKPGKGCNRSFFSPFDHDENGDEDLDEYFHQPEKKRRLTADQVQFLEKSFEVENKLEPERKVQLAKEVGLQPRQVAIWFQNRRARWKTKQLEKDFGSLQASYDSLKADYDNLLKEKDKLKAEVANLTEEVLLREKQEGNFNQEDKSKGKEPEQAQKPLLDTCSDGEGSKVSVGACKQEDVCSAKSDIFDADSPHYTDGVHSALLEPGDSSYVFEPDQSDLSQDEGDNLSKNLFPQYIFPKLEHVDYSDPSKSSYSFGFPAEDHDAFWSWSY 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2651 328 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 77 220 IPR045224 GO:0003700
Alju06g2651 328 Gene3D - 141 192 - -
Alju06g2651 328 Pfam Homeobox associated leucine zipper 146 186 IPR003106 GO:0006355|GO:0043565
Alju06g2651 328 SMART HOX_1 89 150 IPR001356 GO:0003677
Alju06g2651 328 MobiDBLite consensus disorder prediction 191 211 - -
Alju06g2651 328 CDD homeodomain 91 147 IPR001356 GO:0003677
Alju06g2651 328 PRINTS Lambda-repressor HTH signature 117 126 IPR000047 GO:0003677
Alju06g2651 328 PRINTS Lambda-repressor HTH signature 126 142 IPR000047 GO:0003677
Alju06g2651 328 MobiDBLite consensus disorder prediction 191 219 - -
Alju06g2651 328 SUPERFAMILY Homeodomain-like 71 148 IPR009057 -
Alju06g2651 328 ProSiteProfiles 'Homeobox' domain profile. 86 146 IPR001356 GO:0003677
Alju06g2651 328 FunFam Homeobox-leucine zipper protein HAT5 84 148 - -
Alju06g2651 328 Coils Coil 159 193 - -
Alju06g2651 328 ProSitePatterns 'Homeobox' domain signature. 121 144 IPR017970 GO:0000981|GO:0006355
Alju06g2651 328 Pfam Homeodomain 91 144 IPR001356 GO:0003677
Alju06g2651 328 Gene3D - 94 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2651 Alju-ChrAlju06 53500587 53502182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2651 28 326 Homeobox Transcription Factor Family AT3G01470 38.636 6.56e-48 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju06g2651 Homeodomain 1.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2651 06 53500587 53502182 Alju06g2651 06 53500587 53502182 ECH