LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g2633	ATGACCATGTCACAACGATCTCCTCCTCCTCCTCCTGTTTCTAACGAACCCTCTAATCGATCCTCACCTAAACCCAATTCTCAAGGCCATATATCTGATTCTCCCAACGACGTCGTTCCCGCTTCTAAGGAGGAAACCACCGCCGCTCCCGCCACTACCAGGAGCAACCGACCACCGCGCGCCTGCACCATTCGAGCTGCTTCTCGTCTCTATTCACCAACGCAGCCGGCAACTGGCCGGCGACTCAAAGGTTTGAAGAAGGAGCAGCGGTTGCCGGAGGACTCGCCGGAGCAACAGCAGCAATGTAGCGGTATTTTGACACCGCTTGTGGAGTCACCATCACCTTCGCAGTTGCCTCGGTGGAACCTGAGGGCTATGTGGGAGTTAGCTTCTATACTGCATTTCTTACATGTATTTAGGCCTCTTTTGAACATCTCAGCAGAATTCTCGGCCGAAGAGTTTGAGACAGCTCTCCTTAGCCCCAATGACACATTGAGTGATATACATATGCCCTTACTAAAGGCAATCCCTCCCATCACACGAATGGCACTCACACGTGATACCTGGATAACCATATTATGCAGAAAATTGAGAGACTGGTGGCACTGGGTTGCGAATGGGGAACTTCCTATTGTTGCTTCACATGGGCTAGAAATTGAGGCATACAAATCACTTGATCCTGGGACTCGAGTGATAATCTTAAAGGCACTATGCGACATTCGTGTTGAGCAAGAAGATATTCGAAGTTATATTGACAGATCACTCAAACATGGTGTTCAACTTTCATCATTTCGTAAAGAGCGTGTCGGGGGTGATTCACATGGAATTTTTTATTGGTATGAAGATGACCCCATAATTGGCCATAGGTTGTACCGGGAAGTTAGGAAAACTGAAGTCATTCAAATGAGGAAAGGGAAACCAAAAGGTTCCCGGGTCAAATCTAGTACAACATATCATTGGGAAACTGCTGCTACTAGTTTTGATGAATTTGTAGATGTCACTGATAAGCTTGTCTCAAGCAAAAACAAAACGGAGGGGTCACTAGGGAAGAAGTTGAAGATGGACATGCTTCCTGAGATTGAGAAAGTTCACAAGAAAAAAGAGCGGTTGCTGAAAAAGCAACAAAGAGAAGCTCTTCTTCTTGACACTTTCTTGGTTGTTGATGGGATTGGTCCTGGGCGTTCACTTCGTGGTAGGAAACCTGTTACCTACACATTTGATGATTATGATCGGTCCATCAACGAGGCAATTGAGATAACAGCACGAAAACAACCATCCCCAGAGCCTATAACCAAGACAGAAGTAGGAGAAAAACCTGAAGTTTTGACTAACGGTAAATTGAGTGGGCCTTCACACGCCTCTCAACGTCTGAGCTTTAGTGTACCATCTCCAAATTCACCTGACTTTGATGATACTGAGGAAGAGCTTAAATCTGAACCATTGGATCGAAGCAATCGACGAAGACAAAGACCTATGCGGTATTCAGAGAAAGAGTTTGTTCAAGCAGTTTCAGATAATGAGGCAGACTTTGATAGTGATGATGATATTGTTGGAGAAGCCGTGTATGATGACGAATATCTCAGGCAACGTAAGCAAAGAAAGGTTTCTAGTAGCTCCGAAGGAGATGAAGAATATCAATGGGATGAAGAAAATGTTGAAGAAGATGATCAGGAAGATTCACTAAGTATCAGTGAGGAAAGTGACCAACCGCCTAAATTCAAGCCATTGGCAGGCCGTACCAGGAGGGAAACTAAGCTCCAATCTGTTGGTGAGATCCAATCAGGTCTACGACGCAGTAAAAGGGTTACTAGAAACCCCATAAATTACAGACAATATGTGATGTCAGATTCAGAAACAGAATCTACAAAGCCAAAGAGGTCTAATGCCGCAGATGATATTTCAGAACCCAGTGAGAATGAGAACGGGGAATATATGATGGAAACTGAAACAGAAGATTCGGATGTTGGCAAAGATGACGAAGAGCAAGAGGACGAACAGGAAATGAACCTGGATAAGCCAATTGATTTTCCTGTGGAGGAGAGAGACCAAAACCAGCCGCCGGAAAAACTGAACAGTCCCAGACAGGAGGAAGTTGAGGGCATGAACAAAAGACGCTTCCTTGATTTGAATGAGCTTGCCCCTAGCTCTGGTTTTGAAGATGGTCCCAATTCAATAATGAACGATGAAAACGATGATTACTGA	2202	0.4487	MTMSQRSPPPPPVSNEPSNRSSPKPNSQGHISDSPNDVVPASKEETTAAPATTRSNRPPRACTIRAASRLYSPTQPATGRRLKGLKKEQRLPEDSPEQQQQCSGILTPLVESPSPSQLPRWNLRAMWELASILHFLHVFRPLLNISAEFSAEEFETALLSPNDTLSDIHMPLLKAIPPITRMALTRDTWITILCRKLRDWWHWVANGELPIVASHGLEIEAYKSLDPGTRVIILKALCDIRVEQEDIRSYIDRSLKHGVQLSSFRKERVGGDSHGIFYWYEDDPIIGHRLYREVRKTEVIQMRKGKPKGSRVKSSTTYHWETAATSFDEFVDVTDKLVSSKNKTEGSLGKKLKMDMLPEIEKVHKKKERLLKKQQREALLLDTFLVVDGIGPGRSLRGRKPVTYTFDDYDRSINEAIEITARKQPSPEPITKTEVGEKPEVLTNGKLSGPSHASQRLSFSVPSPNSPDFDDTEEELKSEPLDRSNRRRQRPMRYSEKEFVQAVSDNEADFDSDDDIVGEAVYDDEYLRQRKQRKVSSSSEGDEEYQWDEENVEEDDQEDSLSISEESDQPPKFKPLAGRTRRETKLQSVGEIQSGLRRSKRVTRNPINYRQYVMSDSETESTKPKRSNAADDISEPSENENGEYMMETETEDSDVGKDDEEQEDEQEMNLDKPIDFPVEERDQNQPPEKLNSPRQEEVEGMNKRRFLDLNELAPSSGFEDGPNSIMNDENDDY	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g2633	733	Pfam	DDT domain	131	176	IPR018501	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	587	618	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	524	733	-	-
	Alju06g2633	733	PANTHER	REMODELING AND SPACING FACTOR 1	53	696	IPR028938	GO:0006355\|GO:0031213
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	524	541	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	619	633	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	476	495	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	636	668	-	-
	Alju06g2633	733	Coils	Coil	357	377	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	542	563	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	420	495	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	447	467	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	669	706	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	95	114	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	1	18	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	1	114	-	-
	Alju06g2633	733	MobiDBLite	consensus disorder prediction	19	59	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g2633	Alju-ChrAlju06	53334054	53340646	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	DDT	Alju06g2633		DDT	9.2e-07	No_clan

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Alju06g2633	06	53334054	53340646	Alju13g1508	13	33504360	33511877	CCT
	Alju06g2633	06	53334054	53340646	Alju06g2633	06	53334054	53340646	ECH