Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2594 ATGTTTGCAGGCACTACCCAGAAGTGCAAAGCCTGTGAGAAAACAGTGTACTTGGTGGATCAGCTTACTGCTGACAACAAGGTTTACCACAAGTCTTGCTTCAGATGCCACCATTGTAAAGGTACCCTTAAGCTGAGTAATTATAATTCCTTTGAGGGAGTTTTATACTGTAAGCCACATTTTGATCAACTCTTTAAGATGACTGGCAGCTTGGAAAAAAGTTTTGAAGGTATTCCAAGAACTGTTAGAGTTGACAGATCAGGTGATCAGGTCCAAACCAACAGTAAAGTTTCAAGTTTGTTTGGTGGAACTCGAGAAAAGTGTGTTGCTTGCGAGAAAACAGTTTACCCAATTGAAAAGGTGGCTGTTGATGGAAGTTCTTATCACAAGGCTTGTTTCAGGTGCACCCATGGAGGTTGTGTAATCAGTCCATCAAATTACGTGGCCCACGAACATCGCCTTTATTGTAGGCACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTCAGTCAGCTTGACAAGCATGAGAATGGCAATGGGGTGACTGAGAACACACCAAGCCAGTGA 570 0.4316 MFAGTTQKCKACEKTVYLVDQLTADNKVYHKSCFRCHHCKGTLKLSNYNSFEGVLYCKPHFDQLFKMTGSLEKSFEGIPRTVRVDRSGDQVQTNSKVSSLFGGTREKCVACEKTVYPIEKVAVDGSSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQLDKHENGNGVTENTPSQ 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2594 189 Pfam LIM domain 108 163 IPR001781 -
Alju06g2594 189 Pfam LIM domain 9 63 IPR001781 -
Alju06g2594 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 34 - -
Alju06g2594 189 FunFam LIM domain and actin-binding 1 3 73 - -
Alju06g2594 189 CDD LIM2_SF3 108 168 - -
Alju06g2594 189 CDD LIM1_SF3 5 66 - -
Alju06g2594 189 ProSiteProfiles LIM domain profile. 106 166 IPR001781 -
Alju06g2594 189 SMART lim_4 107 159 IPR001781 -
Alju06g2594 189 SMART lim_4 8 60 IPR001781 -
Alju06g2594 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 134 172 - -
Alju06g2594 189 ProSiteProfiles LIM domain profile. 7 67 IPR001781 -
Alju06g2594 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 35 75 - -
Alju06g2594 189 PANTHER OS06G0237300 PROTEIN 5 92 - -
Alju06g2594 189 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 101 133 - -
Alju06g2594 189 FunFam LIM domain and actin-binding 1 102 172 - -
Alju06g2594 189 ProSitePatterns LIM zinc-binding domain signature. 9 43 IPR001781 -
Alju06g2594 189 MobiDBLite consensus disorder prediction 169 189 - -
Alju06g2594 189 Gene3D Cysteine Rich Protein 103 172 - -
Alju06g2594 189 Gene3D Cysteine Rich Protein 3 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2594 Alju-ChrAlju06 52968362 52970801 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Alju06g2594 LIM 3e-10 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2594 06 52968362 52970801 Alju13g1544 13 33723130 33725149 CCT
Alju06g2594 06 52968362 52970801 Alju06g2594 06 52968362 52970801 ECH