Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2569 ATGACTCGTTACTCAAATCACGACCATCGTCGTCTTCTCTCTTTTCCTGCTGTATTCCCATGCCGAGACATCTCTCCCTCCTCTCTTCTCACTTCTTTAATCTCTCTCTCCCTCAATATCTGCAATTTCAAATCCATATTCTTCCCCACACAGCGACATAGCGCCAGAGAAATCATACGCCAGGTTGATGTCATCCTCATGTTCCTCCAGGATCTTCCAGAAATCCCAGAACAATCCCCTGTTATTCTCTGTTTCTCCGAGCTCCACTTTAGTTTCCAGAAGATTCTGTTCTTGCTTCAAGATTGCACTCGTGAAGGTTCCAGATTATGGATGCTCATGAAATCCCAATACGTCGCCTCCCAATTTCATGACATAATTCTTGGGGTCGCCACTGCGCTTGACGTATTATTATTGCCTCTGCGTCGGATTGAGGTTTGTGACGACGTGAAGGAATTGGTGGAACTCGTGGCCAACCAAGCTCGGAAAGTGAAGTTCGAAGTTGACCCTGTCGATGAAGAGAACTCAAAACTAGTTGGTTCGATTTTGCGTCAGTTTGAGAAGGGAATTGAGCCTGAATTGGATGATATGAAGCGAGTTTTGGATTATCTAGAGATAAAGACTTGGACTGATTGTAACAATGAGATTGAATTCTTACAAGACGAGATGGATTTTCAGTCCTCTGAATGCGAAGAGCGTGAGGCTCCTATTCTAAGTGGTTTAATCGGATTCTTGAGTTATTGCAGGGGAGTGATATTTGAAACTCATGATCCTAGCAACCGCACAGATGATTCAGAAGGAAGGTGTAGTACAAAGAAGATGATTAATGGCTTAAACCCGGAGGATTTTCGATGCCCCATTTCGCTTGAGCTAATGACGGACCCAGTAACTGTATCAACAGGTCACACCTACGATCGAACTTCGATTCAGCAATGGCTGAAATCTGGAAACAAAACCTGTCCCAGAACAGGGGCGAAGCTGAAGAACACAGACTTAATCCCAAACACAACACTCCGAAAGTTTATACAACAATTCTGCGTCGACAATGGCGTTTCCTTGACGAAATTAAACAATCAAAGTCGCGACATATCGAAGACCGTCCTCCCCGGAAGCCCCTCAGCGGCTCACGCCACGCAATGTTTGTCCTGGTTTCTTGCTCGGAGGCTCCTTTTTGCACCAATGGAGCAGAAGAACAAAGCAGCGTACGAGATTCGTTTGCTTGGAAGATCCAACATTTTTAACCGGTCGTGTCTGATCCAAGTGGGGACGGTGTCACCTCTGCTTCTACTTTTGTCAACGAGTCATAAATCGGCGCAAGAGAACGCCATTGCTGCTCTGTTGAAGCTCGTAAAGCACAACAATGGCAAAGAAGCTATAATGGAAAATGGAGGCTTAAAGCCAATTGTGTTTGTCCTCAACAAAGGAATAAGCCCAGAATCACGCCAAATCGCAGCTGCCATAATATTCTATCTTGCTTCTGTAAGACATTACAGAAAATTGGTAGGTGAAAACCCAGATGTAATTCCTTCTCTGGTTAAATTGATAAAAGAAGGAACAACGTGTGGAAAGAAGCACGCCATGTCAGCAATCTTCGTGCTTCTCTTACATACAAGTAATCATAAAAGAGTAGTTGAAGCCAATACAGTTCAAGTGTTAGTTGATCTGCTAGCTTCGTCGGAGAAGGAAGATGTGATGACAGATTCGTTAGCTGTTCTTGCGGCTTTAGCAGAGAATAATGAAGGTGTAGAAGCCATGTTGAAAGTGTCGGCTGTGCCATTGATCAGTGGGATACTGAAATCAACAACGAGCAAAACAGGAAAAGAACAGTGTGTTTCGATTTTGTTATCACTGTGTGTGAATGGAGGAGAAGAAGTGATAGGTGTAATGGCGAAAGACGCATCGATAATGGGTTCCCTGTATTTGATTCTTGCGGATGGGACGAGTCGTGGGGCAAAGAAAGCTCGATTTCTCATGAAGATTTTGCACGAGTCTTATGAAAAACCAACTTCTGCGGTGGCAGGAGAACAACAAAACCTTGACGCTGTTAATTTGTTACGTATAAGATGA 2064 0.4404 MTRYSNHDHRRLLSFPAVFPCRDISPSSLLTSLISLSLNICNFKSIFFPTQRHSAREIIRQVDVILMFLQDLPEIPEQSPVILCFSELHFSFQKILFLLQDCTREGSRLWMLMKSQYVASQFHDIILGVATALDVLLLPLRRIEVCDDVKELVELVANQARKVKFEVDPVDEENSKLVGSILRQFEKGIEPELDDMKRVLDYLEIKTWTDCNNEIEFLQDEMDFQSSECEEREAPILSGLIGFLSYCRGVIFETHDPSNRTDDSEGRCSTKKMINGLNPEDFRCPISLELMTDPVTVSTGHTYDRTSIQQWLKSGNKTCPRTGAKLKNTDLIPNTTLRKFIQQFCVDNGVSLTKLNNQSRDISKTVLPGSPSAAHATQCLSWFLARRLLFAPMEQKNKAAYEIRLLGRSNIFNRSCLIQVGTVSPLLLLLSTSHKSAQENAIAALLKLVKHNNGKEAIMENGGLKPIVFVLNKGISPESRQIAAAIIFYLASVRHYRKLVGENPDVIPSLVKLIKEGTTCGKKHAMSAIFVLLLHTSNHKRVVEANTVQVLVDLLASSEKEDVMTDSLAVLAALAENNEGVEAMLKVSAVPLISGILKSTTSKTGKEQCVSILLSLCVNGGEEVIGVMAKDASIMGSLYLILADGTSRGAKKARFLMKILHESYEKPTSAVAGEQQNLDAVNLLRIR 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2569 687 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Alju06g2569 687 SMART arm_5 535 576 IPR000225 GO:0005515
Alju06g2569 687 SMART arm_5 451 492 IPR000225 GO:0005515
Alju06g2569 687 SMART arm_5 577 618 IPR000225 GO:0005515
Alju06g2569 687 SMART arm_5 409 450 IPR000225 GO:0005515
Alju06g2569 687 Pfam U-box domain 279 346 IPR003613 GO:0004842|GO:0016567
Alju06g2569 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 546 589 IPR000225 GO:0005515
Alju06g2569 687 FunFam RING-type E3 ubiquitin transferase 278 350 - -
Alju06g2569 687 Gene3D - 391 679 IPR011989 -
Alju06g2569 687 FunFam RING-type E3 ubiquitin transferase 358 671 - -
Alju06g2569 687 SUPERFAMILY RING/U-box 279 352 - -
Alju06g2569 687 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 421 463 IPR000225 GO:0005515
Alju06g2569 687 SUPERFAMILY ARM repeat 395 660 IPR016024 -
Alju06g2569 687 CDD RING-Ubox_PUB 279 331 IPR045210 -
Alju06g2569 687 PANTHER U BOX DOMAIN-CONTAINING 58 660 - -
Alju06g2569 687 SMART Ubox_2 281 344 IPR003613 GO:0004842|GO:0016567
Alju06g2569 687 ProSiteProfiles U-box domain profile. 277 351 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2569 Alju-ChrAlju06 52788325 52790388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2569 10 669 U-box Gene Family AT1G60190 40.267 2.49e-157 468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2569 06 52788325 52790388 Alju06g2569 06 52788325 52790388 ECH