LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g2546	ATGCTTCCCTCATTTTCTGTCTCAATCTCTGCCATGGATCTGGATACAAATATCAGACAAAACTATGTCTCCCAACATCCAATGCAGTTGCAAGAAATGGAAGCAAAATCCAACGTAAAAGATCACGAACATCCTAATTTTGGGGTTGCTTCATCACAGGGTAATTTCATTTTCTTGCAAGATTTGCCCCATATAGATCCACTTCAAGTATATGGGTCTTCATCATCAATAAATGCAGTTACTACTGGGTTCCAAACTGCAAATTTTGTTAACTACCCTTTTGAAAGTTTCTCCTTTGGCTGTTCATCATCATCAGCAATAGATTTTGATGTTTATGAGTCAAAGCCATTTACTGAAAATATTAATGGCAACAAAGTTATGGAGAATAATTTCCAGTTTGGAGGTAATAATTATAGCTTCAACGTTGTCTCTCAAGAGAGGAATCAAATGGAAATGGTGGGTGCAGATAACCTGATGAGCAATTATTATTTGCCGTTTGATTCTCGAGAAACCAACAAGACTATGAATTTTGTGGTACCAGAAGATGAAGTATCAATAATATCTGCAGATCATAGTTTTCTCAGAAGGGTTGGTTTGAATAATAATAAGAAGAATAGAAGGTTATCATCAACTTCAATCAGAAGGGCATGCAAAGTTCGGAACAAGTCCAACGTAGTAAAGGGACAGTGGACGGTGGAAGAAGATAGGCTGCTAATTCAACTGGTTGAACAATACGGAGTGAGAAAGTGGTCTCATATTGCTCAGAGTTTGCCTGGGAGAATAGGCAAACAATGTCGAGAGCGTTGGCATAATCATTTGAGGCCTAACATCAAGAAGGACACGTGGAGTAATGAAGAGGATAAGATACTAATAGAAGCACACATAGAGATAGGAAATAAATGGGCAGAGATTGCTAAGAAGTTGCCTGGAAGAACTGAAAATTCCATTAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCTAGAAGAAAGTGTCGCTCTAAGCACCCTAAACCCTCTCTTCTTCAAGACTACATCAAGAGCTTGAACTTAGACAAAAACCCACCCATAGATTATCGGAAAAGATCCACTTCTTCTGCTAACCCCAACAACAACAACAACAAAAATCTTATGGCTGGTACAACAAAGAAAGCATCATCATCAGCTACACCGGCATCGAGTGAGCAGTTTTGTCCCAACAATGACAGATTAGTTCCTACATATGACTTCAACGAGGTCCCAGACTTTTGTTTCAATGAGAACATAACTTTGTTTCAAGAGGGGTGCAATCTTGATTCTTTGCTTGATGATATGCCTTGTGATTCTGATCATACTGTGCAAGGAGGAGACTTTGAAGCAAAGTTGCAATTTTTTGGTGATGTCTTTGTTAATGATAGTATTTATCTTGATGGGGATGATCAGTTTGATTCAGGGAAATCACAGAATGATGAGGAGGTAGAAGTTAAGAAGGGGATGGATTTGATGGAGGTGATGTCTCAGATCAAAGATGTTCTTTGA	1521	0.3853	MLPSFSVSISAMDLDTNIRQNYVSQHPMQLQEMEAKSNVKDHEHPNFGVASSQGNFIFLQDLPHIDPLQVYGSSSSINAVTTGFQTANFVNYPFESFSFGCSSSSAIDFDVYESKPFTENINGNKVMENNFQFGGNNYSFNVVSQERNQMEMVGADNLMSNYYLPFDSRETNKTMNFVVPEDEVSIISADHSFLRRVGLNNNKKNRRLSSTSIRRACKVRNKSNVVKGQWTVEEDRLLIQLVEQYGVRKWSHIAQSLPGRIGKQCRERWHNHLRPNIKKDTWSNEEDKILIEAHIEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQYSRRKCRSKHPKPSLLQDYIKSLNLDKNPPIDYRKRSTSSANPNNNNNKNLMAGTTKKASSSATPASSEQFCPNNDRLVPTYDFNEVPDFCFNENITLFQEGCNLDSLLDDMPCDSDHTVQGGDFEAKLQFFGDVFVNDSIYLDGDDQFDSGKSQNDEEVEVKKGMDLMEVMSQIKDVL	506

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g2546	506	MobiDBLite	consensus disorder prediction	323	337	-	-
	Alju06g2546	506	ProSiteProfiles	Myb-like domain profile.	274	324	IPR001005	-
	Alju06g2546	506	CDD	SANT	230	273	IPR001005	-
	Alju06g2546	506	Gene3D	-	226	278	-	-
	Alju06g2546	506	Pfam	Myb-like DNA-binding domain	230	288	-	-
	Alju06g2546	506	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	278	328	IPR017930	-
	Alju06g2546	506	MobiDBLite	consensus disorder prediction	315	338	-	-
	Alju06g2546	506	Gene3D	-	280	332	-	-
	Alju06g2546	506	PANTHER	MYB PROTEIN-RELATED	201	377	-	-
	Alju06g2546	506	SMART	sant	226	275	IPR001005	-
	Alju06g2546	506	SMART	sant	278	326	IPR001005	-
	Alju06g2546	506	FunFam	Transcription factor MYB119	280	344	-	-
	Alju06g2546	506	MobiDBLite	consensus disorder prediction	353	399	-	-
	Alju06g2546	506	CDD	SANT	281	324	IPR001005	-
	Alju06g2546	506	ProSiteProfiles	Myb-like domain profile.	222	273	IPR001005	-
	Alju06g2546	506	SUPERFAMILY	Homeodomain-like	224	320	IPR009057	-
	Alju06g2546	506	MobiDBLite	consensus disorder prediction	361	399	-	-
	Alju06g2546	506	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	222	277	IPR017930	-
	Alju06g2546	506	FunFam	Transcriptional activator Myb isoform A	226	279	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g2546	Alju-ChrAlju06	52466945	52469311	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g2546	68	449	MYB Transcription Factor Family	AT4G18770	49.746	8.54e-105	318

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Alju06g2546		Myb_DNA-bind_6	7.5e-20	CL0123