Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2537 ATGGAGAATCCGTTTGATTTCCACTTCACCGCCGGTTACTCTGATGAGCAGTTACCAATGGCTCCATCATTGCACCCAACTGGTTTCCAGCAGGAGGAATTCACGTTACAGTCGTCTCACCACGTGGTTCCTCTGATGAGCTGGACATCATCAATTGGACCGGAGCAATTAACCCGGTCCAGTTCTTCTTCATCGGCGCCAGATGCTCCGTCGTCATTGACAGCGGATCAGTTTCCGAGAGTGGAAGCCGGATTGGAGGAGGACGACGAGGAGGATTCTAAAAAACTCCGCGCCAAGATCCTTTGCCATCCTTTGTATCCTAAACTTCTGGATGCCTATATCGATTGCCAGAAGGTGGGAGCACCACCGGAGATAGCAAAATTGTTTGAGGAAATCGGACGAGAGAATGGCGATCTATGTCAGAGATCTACTTACCTGGGAGCCGATCCCGAGCTCGATGAATTCATGGAAGCGTATTGCGATTCATTGGTCAAGTACAAGTCGGATCTTTCCAAGCCTTTTGACGAAGCAACGGCGTTTCTTAACGACATGGAAATGCAGCTTAACTCCCTCTGCAACGGCCCTTCAGGAAACTACAATTCTGATGAATTTAGTGGATCATCCGAGGAGGACATCAGCAAGGAAGAGAAAGAAGAAAACGAGTCCAAGAGAATCACTGAGGATCGAGAGTTAAAGGACAAACTTCTTCGTAGATATAGCGGATATATTGTTGGCCTAAAGCATGAATTTTCTAAAAAGAAGAAGAAAGAGAAGCTACCCAAAGAAGCCAGACAAATATTGCTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCGACGGAAGCGGATAAGGTCGCATTAGCTGAATGGACAGGTCTGGATCAAAAGCAAATAAACAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAGCCAACGGAGGAAATGCAAGCAGCAGTTTGGGATGGCCTCTATGGACCTTTTTCCTCGAGTGACGACTGA 1005 0.4677 MENPFDFHFTAGYSDEQLPMAPSLHPTGFQQEEFTLQSSHHVVPLMSWTSSIGPEQLTRSSSSSSAPDAPSSLTADQFPRVEAGLEEDDEEDSKKLRAKILCHPLYPKLLDAYIDCQKVGAPPEIAKLFEEIGRENGDLCQRSTYLGADPELDEFMEAYCDSLVKYKSDLSKPFDEATAFLNDMEMQLNSLCNGPSGNYNSDEFSGSSEEDISKEEKEENESKRITEDRELKDKLLRRYSGYIVGLKHEFSKKKKKEKLPKEARQILLAWWNIHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPTEEMQAAVWDGLYGPFSSSDD 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2537 334 ProSiteProfiles 'Homeobox' domain profile. 250 313 IPR001356 GO:0003677
Alju06g2537 334 Pfam ELK domain 230 251 IPR005539 GO:0003677
Alju06g2537 334 SMART ELK_2 230 251 IPR005539 GO:0003677
Alju06g2537 334 SMART KNOX1_2 94 138 IPR005540 GO:0003677|GO:0005634
Alju06g2537 334 Pfam Homeobox KN domain 270 309 IPR008422 GO:0003677|GO:0006355
Alju06g2537 334 SUPERFAMILY Homeodomain-like 251 325 IPR009057 -
Alju06g2537 334 SMART KNOX2_2 142 193 IPR005541 GO:0003677|GO:0005634
Alju06g2537 334 Gene3D - 248 321 - -
Alju06g2537 334 MobiDBLite consensus disorder prediction 54 72 - -
Alju06g2537 334 CDD homeodomain 264 313 IPR001356 GO:0003677
Alju06g2537 334 MobiDBLite consensus disorder prediction 207 225 - -
Alju06g2537 334 ProSiteProfiles ELK domain profile. 230 250 IPR005539 GO:0003677
Alju06g2537 334 SMART HOX_1 252 317 IPR001356 GO:0003677
Alju06g2537 334 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 100 319 - -
Alju06g2537 334 Pfam KNOX1 domain 96 136 IPR005540 GO:0003677|GO:0005634
Alju06g2537 334 Pfam KNOX2 domain 147 192 IPR005541 GO:0003677|GO:0005634
Alju06g2537 334 MobiDBLite consensus disorder prediction 199 225 - -
Alju06g2537 334 ProSitePatterns 'Homeobox' domain signature. 288 311 IPR017970 GO:0000981|GO:0006355
Alju06g2537 334 MobiDBLite consensus disorder prediction 54 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2537 Alju-ChrAlju06 52388887 52400081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2537 1 329 Homeobox Transcription Factor Family AT1G23380 51.917 2.75e-99 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Alju06g2537 KNOX2 2.5e-23 No_clan