Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2528 ATGGTGGAATCAACCTCATCGATCACTGGCAAGAGTGGACCTTCTTCGGATTCAAAAAATAACAGGGATTATTCCACTGCTATCTTAGAACGTAAGAAGGCTCCTAACCGTCTTGTTGTTGATGAGGCTATTAATGATGACAATTCTGTGGTAACTTTGCATCCTTCTACAATGGAAAAGCTTCAGTTTTTCCGAGGGGACACTGTTCTAATAAAGGGAAAGAAGCGAAGGGACACAGTTTGCATTGTTCTTACTGATGAGCAATGTGAAGAATCAAAAGTTAGGATGAATAAAGTTGTACGGGCAAATCTTAGAGTACGACTTGGAGATGTGGTGTCTGCCCATCAATGTGCTGATGTGAAATATGGGAAGCGGGTTCATATTCTTCCAATTGATGATACTATAGAGGGTGTTACTGGCAACCTGTTTGATGCATATCTCAAGCCATACTTTATGGAGGCCTACCGACCTATGAGAAAAGGTGATCTCTTTCTTGTAAGGGGTGGGATGCGAAGTGTTGAATTCAAAGTAATAGAGACAGATCCTGGTGAATACTGTGTTGTAGCACCGGACACTGAAATCTTCTGTGAAGGAGAACCCATCAAACGTGAAGACGAAGAAGAGAGGCTAAATGAAGTTGGCTATGATGATGTAGGTGGTGTTAGGAAGCAAATGGCTCAAATCCGTGAGTTAGTAGAGCTTCCTCTTAGACACCCACAGCTCTTCAAATCCATTGGTGTTAAGCCCCCAAAAGGAATATTGCTTTATGGACCACCCGGTTCTGGGAAAACTCTGATTGCTAGAGCAGTAGCTAATGAAACAGGGGCATTCTTCTTTTTGATTAATGGACCAGAAATAATGTCAAAGCTGGCTGGTGAGAGTGAAAGCAACTTGAGGAAGGCATTTGAGGAAGCTGAAAAGAATCCCCCCTCTATAATTTTCATTGATGAATTAGATTCAATTGCTCCGAAGAGAGAAAAGACACATGGGGAAGTGGAGAGGAGAATTGTCTCACAACTTTTGACTCTAATGGATGGCCTTAAGGCTCGGTCACATGTCATTGTTATAGGAGCCACCAATAGACCCAATAGCATTGATCCTGCCTTGAGGAGATTTGGGAGATTTGATCGGGAGATTGACATTGGTGTGCCAGATGAAGTTGGAAGATTGGAGGTTCTTAGGATTCACACTAAAAATATGAAACTTGCAGATGATGTTGATCTTGAAAGGGTTGCTAGAGATACCCATGGATATGTTGGTGCAGATCTTGCTTCTCTTTGCACAGAGGCTGCACTACAGTGTATTCGGGAGAAGATGGATGTCATTGACTTAGAAGATGAAACAATTGATGCTGAGGTGTTGAATTCCATGGCTGTGACAAATGATCACTTCCAGACTGCTTTAGTTGCTTCAAATCCATCAGCTTTGCGTGAAACAGTTGTGGAGGTTCCCAATGTTTCCTGGGACGATATTGGGGGCTTGGAGAATGTTAAGAGGGAGCTTCAAGAGACTGTTCAATATCCAGTGGAGCATCCTGAAAAATTTGAGAAATTTGGCATGTCACCTTCGAAAGGTGTTCTCTTCTATGGACCTCCTGGCTGTGGTAAAACCCTTCTTGCAAAAGCAATTGCTAATGAATGCCAAGCCAACTTTATAAGTGTAAAAGGACCTGAGCTGCTAACAATGTGGTTTGGCGAAAGTGAGGCAAATGTGCGTGAAATATTTGACAAGGCCCGGCAATCAGCTCCATGTGTTCTTTTCTTTGATGAACTTGACTCTATTGCAACCCAGCGTGGCAGTTCCACAGGAGATGCTGGAGGTGCTGCGGATAGGGTTTTGAACCAACTATTAACAGAAATGGATGGAATGACTGCTAAAAAAACAGTTTTCATTATTGGGGCAACAAACAGGCCTGACATTATAGACCCTGCATTGCTCAGGCCCGGACGTCTGGACCAACTGATATATATCCCACTGCCAGATGAGAATTCACGCCTTCAAATCTTCAAAGCATGTTTGAGGAAGTCACCAGTCTCCAAGGGTGTTGACCTAACAGCACTTGCCCGTTTTACTCATGGATTCAGCGGTGCTGACATCACAGAAATTTGTCAGAGAGCCTGCAAATATGCTATCAGAGAAGATATTGAGAAGGGTATTGAGCAGGAGAGGAGAAAGAGAGAGAACCCTGAAGCTATGGAAGAGGATGAGGATCTCATTGATGAGACCGCAGAGATAAAGCCATCACATTTCGAGGAATCCATGAAGTTTGCTCGCAGGAGCGTCAGTGATGCAGATATCAGAAAGTACCAACTCTTTGCTCAGACCTTGCAGCAGTCTCGTGGATTTGGATCGGAATTTCGGTTTGCGGATCGAACTGAGAACGCTTCAACTGGAGCTCCAGACCCTTTCGCTTCCACTACTGCAGCAGGAGACGATGATGATTTATACAGTTAA 2454 0.4368 MVESTSSITGKSGPSSDSKNNRDYSTAILERKKAPNRLVVDEAINDDNSVVTLHPSTMEKLQFFRGDTVLIKGKKRRDTVCIVLTDEQCEESKVRMNKVVRANLRVRLGDVVSAHQCADVKYGKRVHILPIDDTIEGVTGNLFDAYLKPYFMEAYRPMRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNPPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKARSHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLADDVDLERVARDTHGYVGADLASLCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNDHFQTALVASNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSTGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDENSRLQIFKACLRKSPVSKGVDLTALARFTHGFSGADITEICQRACKYAIREDIEKGIEQERRKRENPEAMEEDEDLIDETAEIKPSHFEESMKFARRSVSDADIRKYQLFAQTLQQSRGFGSEFRFADRTENASTGAPDPFASTTAAGDDDDLYS 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2528 817 ProSitePatterns AAA-protein family signature. 629 647 IPR003960 GO:0005524|GO:0016887
Alju06g2528 817 Gene3D - 476 659 IPR027417 -
Alju06g2528 817 SMART AAA_5 249 385 IPR003593 GO:0016887
Alju06g2528 817 SMART AAA_5 522 661 IPR003593 GO:0016887
Alju06g2528 817 Gene3D - 663 773 - -
Alju06g2528 817 FunFam Transitional endoplasmic reticulum ATPase 15 119 - -
Alju06g2528 817 Pfam Cell division protein 48 (CDC48), domain 2 139 202 IPR004201 -
Alju06g2528 817 SMART CDC48_2_2 137 203 IPR004201 -
Alju06g2528 817 CDD RecA-like_CDC48_r2-like 497 657 - -
Alju06g2528 817 FunFam Transitional endoplasmic reticulum ATPase 476 659 - -
Alju06g2528 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 484 774 IPR027417 -
Alju06g2528 817 Pfam Cell division protein 48 (CDC48), N-terminal domain 37 118 IPR003338 -
Alju06g2528 817 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 462 IPR027417 -
Alju06g2528 817 Pfam AAA+ lid domain 682 722 IPR041569 -
Alju06g2528 817 Pfam AAA+ lid domain 405 447 IPR041569 -
Alju06g2528 817 MobiDBLite consensus disorder prediction 788 817 - -
Alju06g2528 817 FunFam Transitional endoplasmic reticulum ATPase 214 382 - -
Alju06g2528 817 Gene3D - 218 382 IPR027417 -
Alju06g2528 817 FunFam Cell division control 48 384 475 - -
Alju06g2528 817 CDD RecA-like_CDC48_r1-like 217 382 - -
Alju06g2528 817 SMART CDC48_N_2 37 120 IPR003338 -
Alju06g2528 817 MobiDBLite consensus disorder prediction 1 22 - -
Alju06g2528 817 NCBIfam CDC48 family AAA ATPase 38 777 IPR005938 GO:0016787
Alju06g2528 817 SUPERFAMILY ADC-like 34 117 IPR009010 -
Alju06g2528 817 Gene3D - 120 217 - -
Alju06g2528 817 PANTHER AAA-FAMILY ATPASE 412 779 - -
Alju06g2528 817 FunFam Cell division control 48 120 217 - -
Alju06g2528 817 Gene3D - 384 475 - -
Alju06g2528 817 Pfam ATPase family associated with various cellular activities (AAA) 526 659 IPR003959 GO:0005524|GO:0016887
Alju06g2528 817 Pfam ATPase family associated with various cellular activities (AAA) 253 382 IPR003959 GO:0005524|GO:0016887
Alju06g2528 817 SUPERFAMILY Cdc48 domain 2-like 119 209 IPR029067 -
Alju06g2528 817 ProSitePatterns AAA-protein family signature. 353 371 IPR003960 GO:0005524|GO:0016887
Alju06g2528 817 Gene3D - 15 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2528 Alju-ChrAlju06 52297027 52301668 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2528 518 717 Calmodulin-binding Proteins AT3G56690 41.872 6.86e-40 157