Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2527 ATGGTAGTTGTGGTTGTAATGCCTGAAAATCCATGGACGACCCTCTTCTTCTTATTCCTAGTAACTGCTCTTTTACTTCACTCCCAGCATTCTTTTATTGCTTCTGCTGTTAACCCACAAGGGCAAGCTCTTCTTTCATGGAAGACAACATCTCTAAACGGGTCCTTGGAGGTGCTGGGTAATTGGGACCCGATTGATGAAACTCCATGTGGCTGGTTTGGAGTTAGCTGCAACTTCAAGAACGAGGTTGTGCAGTTAGATCTGAGGTATGTTGATTTGCTTGGAAGTATTCCTTCTAATTTCACCTCATTGAGTTCCTTGACCAAGCTTATCCTTATTGGCACGAACCTTACTGGTTCTATCCCGAAAGAGATAGGCTCTCTTAGCAATCTCACCTACTTGGATTTGAGTGACAATGCTTTGACTGGTGAGATCCCAAGTGAGCTTTGCTTTTTGCCTGAGCTTCAAGAACTTCATCTTAACTCAAACCAGCTTGAAGGGTCGATTCCATTTTCAATTGGGAATCTCACAAAGTTGGAGTGGCTGACCTTGTATGATAATCAGCTAAGTGGTGAAATTCCCAGAACGATTGGCAATCTGAAGAATCTGCAAGTGATTCGAGCTGGTGGAAACAAGAATCTTGAAGGTGCTTTGCCTCAAGAAATAGGATACTGTACCAAATTGGTTATGTTGGGTTTAGCTGAAACAAGTATCTCAGGATTTCTTCCTCCAACTCTTGGCCTCCTCAAGAAGCTCAACACTATTGCAATTTACACTTCCCTTCTCTCTGGCCAGATTCCTCATGAACTTGGTGATTGCACTGAACTTGAGAACATTTATTTGTACGAGAATTCCCTCACTGGATCGTTGCCTAGCAGATTGGGAAATCTTAGGAACCTTAAGAATCTTCTTTTATGGCAGAACAATTTAGTTGGCACAATCCCACCAGAAATTGGAAATTGCTACCAGTTATCTGTTATTGACATCTCAATGAACTCGCTCACAGGAAGCATTCCCAAGAGTTTTGGAAATTTGACGGCTCTGGAAGAACTTCAACTAAGTGAAAACCAGATTTCAGGGGAGATTCCTACAGAGCTAGGGAACTGCGAGCAACTCACTCACATCGAGCTGGATAACAATCAAATCACAGGGACGATACCTTCTGAATTTGGGAACCTTAGTAATCTGACTTTGTTGTTCCTGTGGCATAACAAGCTCGAAGGAAATATACCATCTTCACTTTCCAATTGTCAAAACCTCGAGGCTGTAGATCTGTCACAGAATGCACTGACGGGTCTCATACCAAAGGGGATATTCGAGCTCAAGAACCTCAACAAGCTTTTGCTGCTTTCTAATAATCTCTTCGGAGATATTCCATCTGAAATTGGGAATTGTTCGTCTTTGATTCGTTTCCGAGTGAGCAAAAATAAGATCACTGGGAGTATTCCCCCACAGATTGGGAATCTGAGGAACTTAAACTTTTTGGATCTTGGATTCAATCGGATTTCTGGAGTTATTCCGGAAGAGATGTCAGGCTGCAGGAATCTCACGTTCTTGGACCTACATTCCAATATGATCGCCGGGAGCTTGCCGGAGAGCCTAAGTGAGCTTGTCTCGCTTCAATTCATCGACTTCTCTGATAACATGATCGAAGGTACACTGAGCCCGAGATTAGGATCGCTTGGTTCACTCACAAAACTGATTCTTGGAATAAATCATATCTCTGGATCAATTCCGAGTCAACTCGGTTCCTGTTCGAAGCTTCAGTTGCTGGATCTTAGTAGCAACAATTTCTCCGGCAATATCCCTGGTACTCTTGGTAATATACCGGGGCTTGAAATTGCACTGAATCTGAGCTTGAATAAACTTTTCGGCGAGATTCCTCAGGAGTTTTCAGGCTTGGTTAAGCTGGGGATCTTAGACATTTCCCACAACGAGCTCACCGGCAACCTTCATTACCTCGCGGATCTCCAAAATCTTGTCGTCCTCAATATCTCCTACAACAAATTCTCCGGACGCATCCCAGACACGCCGTTCTTCGCAAAGCTTCCTCTAAGTGTGCTCGCCGGCAACCCATCGCTATGCCTATCCGTAAACCGATGCGCCGAGGACGATTCTGGAAATCGTTCAGGCAGGCAGGCGAAGACTGCGCGTATAGCAATGGTGGTCCTACTTTGCACAGCATGTGCTCTGCTCTTGGCGGCGCTGTACGTCGTCGTCGCGGCAAAACGACGACAGAGGGGCCACGGTAACGATCTCGATCTCGACGGGAGGGAAAGTGACACGGAGATGGGCCCACCTTGGGAAGTGACAGTGTACCAGAAGCTCGACCTGTCAATTTCCGACGTGGTAAAGTGTCTCACCGCCGGGAACGTCATTGGGCGGGGACGATCCGGCGTCGTTTACAGAGTGAACACGCCAGCGGGAATAGAAATGGCCGTGAAGAGGCTCCGGTCGTCGGAGAAATTCTCTGCGGCGGCGTTCTCGGCGGAGATAACGACATTGGCGAGAATACGACACCGTAATATCGTGAGGCTATTGGGTTGGGCGGCGAACCAGAAGACGAAGTTATTGTTTTATGATTATTTACCGAACGGTAATCTGGATACGCTTTTACACGAGGGGTGCACAGGATTAATCGAGTGGGAGATACGGTTCAAGATAGCACTGGGCGTGGCGGAAGGCCTAGCTTACCTGCATCATGACTGTGTGCCTGCTATCTTGCACCGGGACGTAAAAGCGCACAACATTTTGTTAGGAGATAGGTACGAGCCGTGTCTCGCAGATTTTGGTTTTGCCAGATTGGTTCAGGATGGCCAAGCCTCCTTCTCGGTGAATCCACAGTTCGCTGGTTCTTACGGCTACATTGCGCCGGAGTATGGGTGCATGCTGAAGATAACAGAGAAGAGCGATGTGTATAGCTACGGAGTGGTACTATTAGAAATAATAACAGGAAAACGACCGGTGGACGCGTCGTTTGGTGAGGGTCTACATGTGATAGACTGGGTGAGAGACCACCTGAAAAGAAAGAAGAACCCAGTGGAGATTGTGGATCCAAAGCTTCAAGGCCACACAGACACACACATACAAGAGATGATTCAAGCTCTCGGGATCTCCCTCCTCTGTACCAGCACTCGCCCCGACGATCGTCCCACCATGAAAGACGTCGCTGCCTTGCTCCGAGAGATCCGGCACGATCCTCCGGCGGGCCACGAGGCCCACAAGCCCAAGCCCACCACCAACTCTTCCTCCTCCTCCTCTGTTACTCCAGCCCAGTTGTTGCTTCTTGATCAACCTTCGTCTCATTCTTCTTCGCTTGCTTATTCGTCTTCTACTCTACAAGGAAGGAGTGCGTGA 3357 0.4745 MVVVVVMPENPWTTLFFLFLVTALLLHSQHSFIASAVNPQGQALLSWKTTSLNGSLEVLGNWDPIDETPCGWFGVSCNFKNEVVQLDLRYVDLLGSIPSNFTSLSSLTKLILIGTNLTGSIPKEIGSLSNLTYLDLSDNALTGEIPSELCFLPELQELHLNSNQLEGSIPFSIGNLTKLEWLTLYDNQLSGEIPRTIGNLKNLQVIRAGGNKNLEGALPQEIGYCTKLVMLGLAETSISGFLPPTLGLLKKLNTIAIYTSLLSGQIPHELGDCTELENIYLYENSLTGSLPSRLGNLRNLKNLLLWQNNLVGTIPPEIGNCYQLSVIDISMNSLTGSIPKSFGNLTALEELQLSENQISGEIPTELGNCEQLTHIELDNNQITGTIPSEFGNLSNLTLLFLWHNKLEGNIPSSLSNCQNLEAVDLSQNALTGLIPKGIFELKNLNKLLLLSNNLFGDIPSEIGNCSSLIRFRVSKNKITGSIPPQIGNLRNLNFLDLGFNRISGVIPEEMSGCRNLTFLDLHSNMIAGSLPESLSELVSLQFIDFSDNMIEGTLSPRLGSLGSLTKLILGINHISGSIPSQLGSCSKLQLLDLSSNNFSGNIPGTLGNIPGLEIALNLSLNKLFGEIPQEFSGLVKLGILDISHNELTGNLHYLADLQNLVVLNISYNKFSGRIPDTPFFAKLPLSVLAGNPSLCLSVNRCAEDDSGNRSGRQAKTARIAMVVLLCTACALLLAALYVVVAAKRRQRGHGNDLDLDGRESDTEMGPPWEVTVYQKLDLSISDVVKCLTAGNVIGRGRSGVVYRVNTPAGIEMAVKRLRSSEKFSAAAFSAEITTLARIRHRNIVRLLGWAANQKTKLLFYDYLPNGNLDTLLHEGCTGLIEWEIRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDRYEPCLADFGFARLVQDGQASFSVNPQFAGSYGYIAPEYGCMLKITEKSDVYSYGVVLLEIITGKRPVDASFGEGLHVIDWVRDHLKRKKNPVEIVDPKLQGHTDTHIQEMIQALGISLLCTSTRPDDRPTMKDVAALLREIRHDPPAGHEAHKPKPTTNSSSSSSVTPAQLLLLDQPSSHSSSLAYSSSTLQGRSA 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2527 1118 SUPERFAMILY RNI-like 327 675 - -
Alju06g2527 1118 ProSitePatterns Protein kinases ATP-binding region signature. 793 815 IPR017441 GO:0005524
Alju06g2527 1118 ProSiteProfiles Leucine-rich repeat profile. 130 153 IPR001611 GO:0005515
Alju06g2527 1118 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 347 416 - -
Alju06g2527 1118 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 240 340 - -
Alju06g2527 1118 FunFam Putative LRR receptor-like serine/threonine-protein kinase 772 862 - -
Alju06g2527 1118 ProSiteProfiles Protein kinase domain profile. 787 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju06g2527 1118 SMART serkin_6 787 1069 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju06g2527 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 37 211 - -
Alju06g2527 1118 SMART LRR_sd22_2 537 573 - -
Alju06g2527 1118 SMART LRR_sd22_2 634 659 - -
Alju06g2527 1118 SMART LRR_sd22_2 393 422 - -
Alju06g2527 1118 SMART LRR_sd22_2 273 299 - -
Alju06g2527 1118 SMART LRR_sd22_2 176 202 - -
Alju06g2527 1118 SMART LRR_sd22_2 489 512 - -
Alju06g2527 1118 SMART LRR_sd22_2 128 151 - -
Alju06g2527 1118 SMART LRR_sd22_2 345 371 - -
Alju06g2527 1118 SMART LRR_sd22_2 513 536 - -
Alju06g2527 1118 Gene3D Ribonuclease Inhibitor 232 337 IPR032675 -
Alju06g2527 1118 Gene3D Ribonuclease Inhibitor 338 433 IPR032675 -
Alju06g2527 1118 MobiDBLite consensus disorder prediction 1076 1118 - -
Alju06g2527 1118 Gene3D Phosphorylase Kinase; domain 1 770 862 - -
Alju06g2527 1118 Pfam Leucine rich repeat 470 526 IPR001611 GO:0005515
Alju06g2527 1118 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Alju06g2527 1118 Pfam Leucine rich repeat 298 358 IPR001611 GO:0005515
Alju06g2527 1118 MobiDBLite consensus disorder prediction 1066 1118 - -
Alju06g2527 1118 Gene3D Transferase(Phosphotransferase) domain 1 863 1081 - -
Alju06g2527 1118 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 391 1055 - -
Alju06g2527 1118 SUPERFAMILY Protein kinase-like (PK-like) 774 1062 IPR011009 -
Alju06g2527 1118 ProSitePatterns Serine/Threonine protein kinases active-site signature. 907 919 IPR008271 GO:0004672|GO:0006468
Alju06g2527 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 419 705 - -
Alju06g2527 1118 Pfam Leucine Rich repeat 129 145 IPR001611 GO:0005515
Alju06g2527 1118 Pfam Leucine rich repeat N-terminal domain 38 78 IPR013210 -
Alju06g2527 1118 Gene3D Ribonuclease Inhibitor 530 614 IPR032675 -
Alju06g2527 1118 Gene3D Ribonuclease Inhibitor 615 702 IPR032675 -
Alju06g2527 1118 Gene3D Ribonuclease Inhibitor 434 529 IPR032675 -
Alju06g2527 1118 Pfam Protein kinase domain 790 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju06g2527 1118 Gene3D Ribonuclease Inhibitor 39 150 IPR032675 -
Alju06g2527 1118 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 863 1077 - -
Alju06g2527 1118 SUPERFAMILY RNI-like 86 407 - -
Alju06g2527 1118 SMART LRR_typ_2 561 585 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 297 321 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 441 465 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 514 537 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 176 200 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 657 681 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 128 150 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 393 417 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 489 513 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 345 369 IPR003591 -
Alju06g2527 1118 SMART LRR_typ_2 152 175 IPR003591 -
Alju06g2527 1118 Gene3D Ribonuclease Inhibitor 151 231 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2527 Alju-ChrAlju06 52290131 52294606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2527 36 1113 Receptor kinase-like Gene Family AT5G56040 53.726 0.0 1105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Alju06g2527 Pkinase 3.8e-42 CL0016