Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2514 ATGGGTCGCCATTCCTGTTGTGTAAAGCAAAAACTGAGAAAGGGTCTGTGGTCCCCTGAAGAAGATGAGAAGCTCTTCAATTACATTACCACATACGGCGTTGGCTGCTGGAGTTCTGTTCCCAAACTCGCCGGGTTGCAAAGATGTGGGAAGAGTTGCAGATTGAGATGGATTAATTACCTGAGGCCTGATTTGAAGAGAGGCATGTTTTCTCAGCAAGAAGAAGATCTCATAATCAGCCTCCATGAAGTTCTTGGCAACAGGTGGGCTCAGATTGCAGCACAGTTACCAGGAAGAACAGATAATGAGATAAAGAATTTCTGGAATTCAAGTCTGAAGAAGAAGCTGCAGAAACAAGGAATTGACCCAACCACACACAAACCATTGAATATTGTTACAGAACCTCAATATCACCATCAATCATCAATGAAGGAGGAGAAGAAAAGTACTCTCAGTAGAGATTCTTCAGAGATATTTGTATTACCATCTTCTATAATTCCATTCTCAGTCTCATCATCATCACAAGGATCATCATGTCTAGCTGCAGGAAGTGATTCCAATAATAACCAGTTTGATCACAATAATAATAATAATGGTTATGACCCATTGGCCTTATTTGAGGCGTCGTTGTTCCAAATGAGTGGTGGTTTAAACCAATTATCTTCTGGGTTTGGATTCAACATGTCCTCAACAATGCCAGGTCTGATCACTAACTCCACCATGATGACGGAGTTATCATCGGAAAATAATTCCGGTTCGAGGATCAGTTCAAGCAATAGCTTGAGCAGCTATGTTCAACCAGGAGGGTGCCAGATAAGTAATAATAACAGCTTAATGGTGGATCCATTATTGTATCAGTTTCAATTTAATGGTGATGTAAAGAACGAAGAAGATTATTATCAGATGATGAAGACGGGGGCCGCGGCAGGGTCGTCGTCGTGGGAAGAAGATGGCGGCGGCCAGATTCTGAATCAAAGCTCTATAAATTTCACCGCCACATATCCATTAACGTCACTGTCAGAAGATCTATCACCCGCGAATTTTGATGCTTTCAACCATATGTGA 1065 0.4178 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITTYGVGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLQKQGIDPTTHKPLNIVTEPQYHHQSSMKEEKKSTLSRDSSEIFVLPSSIIPFSVSSSSQGSSCLAAGSDSNNNQFDHNNNNNGYDPLALFEASLFQMSGGLNQLSSGFGFNMSSTMPGLITNSTMMTELSSENNSGSRISSSNSLSSYVQPGGCQISNNNSLMVDPLLYQFQFNGDVKNEEDYYQMMKTGAAAGSSSWEEDGGGQILNQSSINFTATYPLTSLSEDLSPANFDAFNHM 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2514 354 Coils Coil 354 354 - -
Alju06g2514 354 FunFam Myb transcription factor 11 67 - -
Alju06g2514 354 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Alju06g2514 354 FunFam Transcription factor MYB86 69 136 - -
Alju06g2514 354 SMART sant 66 114 IPR001005 -
Alju06g2514 354 SMART sant 13 63 IPR001005 -
Alju06g2514 354 CDD SANT 17 61 IPR001005 -
Alju06g2514 354 CDD SANT 70 112 IPR001005 -
Alju06g2514 354 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Alju06g2514 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Alju06g2514 354 Gene3D - 11 67 - -
Alju06g2514 354 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Alju06g2514 354 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Alju06g2514 354 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Alju06g2514 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Alju06g2514 354 Gene3D - 69 150 - -
Alju06g2514 354 PANTHER MYB DOMAIN PROTEIN 55 1 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2514 Alju-ChrAlju06 52092562 52093907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2514 1 132 MYB Transcription Factor Family AT4G01680 83.333 1.55e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju06g2514 Myb_DNA-binding 7.7e-14 CL0123