Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2512 ATGGGCACAATAGACTTCTGGGGGAATTCAGTTTGGTTCAGTTTGATAAATGGAAAGTTATTGAATCAAATCAATTGTAAACAAGTATGTATTGACGAGTGGGTTTCATTGAAACATGCATTAATACTAATAAATAGTTGGGTCAACTTGAAGATTTCTTGCACTTTCTGTTTTGAACTCCTTGCAACGAAAGCCAGGCAATACTAGTTACAACATACGATCGTATTTAAGCATGTCTTCAGGGTGATGCTCTATCTATGGAACAATGAAAATGTCAGTTTGGAGGGGCATGAATTGTGCAAAATTTTGCAAAACAGGAAGGAGGAGACTGAAGCCGAGAAGATGACGACGAGGTTCAAGAAGAACAGAAAAAAGAGAGGGCACGTGAGCGCTGGCCATGGTCGTATCGGAAAGCACAGGAAGCATCCAGGAGGTCGTGGTAACGCCGGAGGTATGCACCACCACCGAATCCTTTTCGATAAATACCATCCTGGTTATTTCGGTAAGGTCGGTATGCGATACTTTCACAAACTTCGCAACAAATTCTATTGCCCCATTGTCAATATCGACAAACTCTGGTCCTTGGTTCCCCAAGAAGTGAAGGATAAGGCTTCCAAGGATAGCGCTCCGTTGATCGATGTCACTCAATATGGTTACTTCAAGGTGTTGGGCAAAGGGGTTTTGCCTGAGAATAAGCCCTTCGTCGTGAAGGCCAAGCTCGTGTCCAAGACTGCTGAGAAGAAGATCAAAGAGGCTGGAGGAGCTGTTGTCCTCACTGCTTAG 783 0.4393 MGTIDFWGNSVWFSLINGKLLNQINCKQVCIDEWVSLKHALILINSWVNLKISCTFCFELLATKARQYXLQHTIVFKHVFRVMLYLWNNENVSLEGHELCKILQNRKEETEAEKMTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPIVNIDKLWSLVPQEVKDKASKDSAPLIDVTQYGYFKVLGKGVLPENKPFVVKAKLVSKTAEKKIKEAGGAVVLTA 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2512 260 FunFam 60S ribosomal protein L27a 172 260 - -
Alju06g2512 260 Hamap 50S ribosomal protein L15 [rplO]. 115 259 IPR030878 GO:0003735|GO:0006412|GO:0015934
Alju06g2512 260 ProSitePatterns Ribosomal protein L15 signature. 221 253 IPR001196 GO:0003735|GO:0005840|GO:0006412
Alju06g2512 260 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 142 257 IPR021131 -
Alju06g2512 260 Gene3D - 172 260 - -
Alju06g2512 260 PANTHER 60S RIBOSOMAL PROTEIN L27A 115 260 - -
Alju06g2512 260 MobiDBLite consensus disorder prediction 129 149 - -
Alju06g2512 260 SUPERFAMILY Ribosomal proteins L15p and L18e 120 259 IPR036227 -
Alju06g2512 260 MobiDBLite consensus disorder prediction 129 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2512 Alju-ChrAlju06 52059966 52064243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2512 115 260 Cytoplasmic Ribosomal Protein Gene Family AT1G70600 91.096 1.49e-97 280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2512 06 52059966 52064243 Alju13g1616 13 34433626 34435292 CCT
Alju06g2512 06 52059966 52064243 Alju13g1616 13 34433626 34435292 ECH
Alju06g2512 06 52059966 52064243 Alju06g2512 06 52059966 52064243 ECH