Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2511 ATGAACCCTTACGACAACAGATATACAGACTCGACTTCTTATCGCAACCGCAGGAGTGATTTGATCGGACCTATGCCGCCGATGGTCCCTTCAATGATTGGCGGTGCCAGCTCGAGCTACGGCCGGGGAGGTCCTGCTTCTCATGGTCCTCCACCGGTTGGTTCTAATATGGGTGGAAGAGGTGCTGGGAGCGCTTTTGGAACGGCACCTGCTGCCCCAAAGTATAATGAGTTGCCGTCGTTTATGCCACCTCCTGGAGGCTTTGACATAGGTCGCGGTGGTGGTGCTAGCCAAAGGGGCTTCGGCGGTAGACCCGGAAACGGTCATGTTGGTGATAGAAAAGATGACGCAGGTCGGCGCGGCGGTGGCAGAGATCAGGGAGGTGGTAGGTTTGGTGGAGGTCACGGAGACAAGTCCTCGGGGAGAGGAGGTGGGTTTGGAGGTAGAGGTTTCGGTGGAAGCGCAGGATTTGGCGGTGGCCGTGGCCGTGTTGGTGGTGGTGGTGGTAGAGGAGGAAGACACGGTGGATCTTCCAAGGATGACTTGGACAACATAGCACTTCCCAAGCAAGATTTTAGAAATTTGGTTCCATTTGAGAAGAATTTTTACACCGAAAGCCCGTCGGTGGAGGCAATGTCTGATCATGAGCTTATGGCTTACCGTGCCATTAAGGAGATCACAGTGCAAGGGCATGACATTCCCAAACCAATTCGGACGTTTCAAGATGCCAATTTTCCTGATTACTGTCTTGAGGTGATTGCCAAGTTGGGTTTTGTGGAGCCTACACCAATTCAAGCTCAAGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCAGGAAAAACACTCGCATATCTGCTTCCTGCTTTAGTGCATATCAGTGCACAACCTCGATTGGTACAAGGTGAAGGTCCCATCGTCTTAGTTCTGGCTCCAACTAGAGAGTTAGCTGTTCAAATTCAGGAAGAAGCTGTAAAATTTGGCTCTCGAGCAAATATCAGAAGTACTTGTATCTATGGCGGTGCCCCAAAGGGACCTCAAATTCGTGATCTTAAAAGAGGTGTTGAAATTGTTATTGCTACACCTGGTCGTCTAATTGATATGTTGGAAGCTCAGCATACAAATCTGCGAAGGGTGACATACCTTGTGTTGGATGAAGCTGATCGAATGCTGGACATGGGCTTTGAACCTCAGATAAGAAAAATTGTTGGGCAGATCCGGCCTGATAGACAGACATTGTACTGGAGTGCAACATGGCCAAGAGAGGTTGAAACCCTGGCAAGGCAGTTTCTACGCAACGCATACAAGGTAATTATTGGATCGCCAGATTTGAAAGCAAACCAATCTATAAATCAAGTTGTTGAAGTCTTAACAGAAGTGGAGAAATACAATAGATTGATCAGATTGCTTAAAGAAGTGATGGATGGGAGTCGAGTTCTTATATTTATTGAGACAAAAAAGGGTTGCGATCAAGTTACAAGGCAATTGAGAATGGATGGATGGCCTGCACTTTCTATCCATGGTGATAAAAACCAGGCCGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGCAGAAGTCCAATAATGACTGCCACTGATGTTGCTGCACGGGGTCTTGATGTGAAGGACATTAAATGTGTGATCAATTATGATTTCCCATCGAGCCTGGAGGATTATGTCCACCGAATTGGTCGAACAGGGCGTGCAGGGGCTAAAGGAACCGCCTTCACCTTCTTCACGCGTGCAAACGTCAAGTTTGCCAGGGATTTGATCAAGATCTTACAAGATGTTGGCCAGATTGTGAGTCCTGCTCTATCTGCCTTGGCTCGGTCAGCTGGTTCTGGTCAATTTGGATCCGGGGGAAACTTCCGCTCCAGGGGACGGGGAGGTTATGGCAATCGAGGTCACATATCTGGATCCAATACCACTCCTCTGGGTTCAAGGAAGCAATGGTAG 1980 0.4864 MNPYDNRYTDSTSYRNRRSDLIGPMPPMVPSMIGGASSSYGRGGPASHGPPPVGSNMGGRGAGSAFGTAPAAPKYNELPSFMPPPGGFDIGRGGGASQRGFGGRPGNGHVGDRKDDAGRRGGGRDQGGGRFGGGHGDKSSGRGGGFGGRGFGGSAGFGGGRGRVGGGGGRGGRHGGSSKDDLDNIALPKQDFRNLVPFEKNFYTESPSVEAMSDHELMAYRAIKEITVQGHDIPKPIRTFQDANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHISAQPRLVQGEGPIVLVLAPTRELAVQIQEEAVKFGSRANIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTNLRRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNAYKVIIGSPDLKANQSINQVVEVLTEVEKYNRLIRLLKEVMDGSRVLIFIETKKGCDQVTRQLRMDGWPALSIHGDKNQAERDWVLAEFKSGRSPIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTRANVKFARDLIKILQDVGQIVSPALSALARSAGSGQFGSGGNFRSRGRGGYGNRGHISGSNTTPLGSRKQW 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2511 659 CDD SF2_C_DEAD 457 587 - -
Alju06g2511 659 SMART helicmild6 497 578 IPR001650 -
Alju06g2511 659 SMART ultradead3 257 460 IPR014001 -
Alju06g2511 659 Gene3D - 201 444 IPR027417 -
Alju06g2511 659 FunFam probable ATP-dependent RNA helicase DDX17 200 447 - -
Alju06g2511 659 Pfam DEAD/DEAH box helicase 262 433 IPR011545 GO:0003676|GO:0005524
Alju06g2511 659 MobiDBLite consensus disorder prediction 643 659 - -
Alju06g2511 659 MobiDBLite consensus disorder prediction 108 123 - -
Alju06g2511 659 CDD DEADc_DDX5_DDX17 250 444 - -
Alju06g2511 659 MobiDBLite consensus disorder prediction 1 184 - -
Alju06g2511 659 Pfam Helicase conserved C-terminal domain 468 578 IPR001650 -
Alju06g2511 659 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 214 617 - -
Alju06g2511 659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 311 598 IPR027417 -
Alju06g2511 659 FunFam ATP-dependent RNA helicase RhlB 448 621 - -
Alju06g2511 659 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 472 617 IPR001650 -
Alju06g2511 659 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 238 266 IPR014014 GO:0003724
Alju06g2511 659 Gene3D - 445 620 IPR027417 -
Alju06g2511 659 MobiDBLite consensus disorder prediction 1 18 - -
Alju06g2511 659 MobiDBLite consensus disorder prediction 627 659 - -
Alju06g2511 659 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 269 444 IPR014001 -
Alju06g2511 659 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 390 398 IPR000629 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2511 Alju-ChrAlju06 52055786 52059728 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2511 235 598 Eukaryotic Initiation Factors Gene Family AT3G19760 35.989 1.56e-70 233