Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2462 ATGATGATCTTTGACAAAATGGATTCGTTGGATAATCATGTGAGCTATCTGAATCCTTCATTTCATTTCCCTTATCCTCAAACCCTCCTCCCTCGCTCTTTGTACTCAGATACAAGTATGTCTATCACCTCTATACCTTCCTTGAAGACCCTAACAATGGCAGAATTACGCCTTCTCTCACTTCCTTCTTTAACCTCCAACAAAACCAAACATCCTTTCATCTCCATTCCGTCTAAACCTTTTAAACTTCAGGTCTCTTGCTCCAATTCCTCCCTCTTTCTATCATCTCTGTCCCTCACTAAGAAAACCCACAATTTATCTATACTCACATTCGTAGCTCAGACTTCAGACTGGGCTCAACAGGACGAAGACAACACCGTCACCATAGATGAAGAGGAACATCAAGACGTGGATGACGCTGAAGCTCGTCTTTCGGATTGGGAGGTTGATGGTGAAGGCGCGGGAATTGAGGGTAGCGAGGGCGAAGGAGAGAGTAATGAAGATGATGAATTTTTGAAGGGTGGGGATTTTCCAGAACCACCTGAAGATGCCAAACTTTTTGTTGGTAATTTGCCTTATGATGCTGATAGTCAGAGATTAGCCATGCTTTTTGAGCAGGCCGGAACGGTGGAAATTGCCGAGGTTATTTATAACAGGAGCACTGACCAAAGTCGTGGATTCGGATTTGTAACGATGAGTACAGTTGAAGAAGCTGAGAAAGCTGTCGAAAAGTTCCATCGCTATGAGCTTGGTGGAAGACTGTTGACTGTTAACAAGGCTGCTCCAAGGGGAACACAGCCTGAACGCCCCCCTCGGGCCTTTGAACCATCCTTTAGAGTCTACGTAGGCAACTTGCCATGGGATGTTGATAACGGTCGCCTGGAGCAGATTTTCAGCGAACATGGTAAGGTTGTGAGTGCACGGGTAGTCTATGACAGAGAGACTGGTCGATCTCGTGGTTTTGGCTTTGTCACAATGTCCAGTGAAAGAGAGATGAATGATGCCATTGCTGCTCTTGATGGCCAGAGTTTGGACGGGAGGGCCATTAGAGTGAATGTTGCTGAGGAAAGGCCAAGGCGAGGCGGCTTTTGA 1092 0.4625 MMIFDKMDSLDNHVSYLNPSFHFPYPQTLLPRSLYSDTSMSITSIPSLKTLTMAELRLLSLPSLTSNKTKHPFISIPSKPFKLQVSCSNSSLFLSSLSLTKKTHNLSILTFVAQTSDWAQQDEDNTVTIDEEEHQDVDDAEARLSDWEVDGEGAGIEGSEGEGESNEDDEFLKGGDFPEPPEDAKLFVGNLPYDADSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAEKAVEKFHRYELGGRLLTVNKAAPRGTQPERPPRAFEPSFRVYVGNLPWDVDNGRLEQIFSEHGKVVSARVVYDRETGRSRGFGFVTMSSEREMNDAIAALDGQSLDGRAIRVNVAEERPRRGGF 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2462 363 FunFam 31 kDa ribonucleoprotein, chloroplastic 113 267 - -
Alju06g2462 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 255 IPR000504 GO:0003723
Alju06g2462 363 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 280 350 IPR000504 GO:0003723
Alju06g2462 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 278 356 IPR000504 GO:0003723
Alju06g2462 363 PANTHER OS02G0815200 PROTEIN 64 358 - -
Alju06g2462 363 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 262 IPR000504 GO:0003723
Alju06g2462 363 MobiDBLite consensus disorder prediction 153 167 - -
Alju06g2462 363 FunFam 31 kDa ribonucleoprotein, chloroplastic 268 362 - -
Alju06g2462 363 SMART rrm1_1 185 258 IPR000504 GO:0003723
Alju06g2462 363 SMART rrm1_1 279 352 IPR000504 GO:0003723
Alju06g2462 363 CDD RRM2_NsCP33_like 279 354 - -
Alju06g2462 363 Gene3D - 268 363 IPR012677 -
Alju06g2462 363 SUPERFAMILY RNA-binding domain, RBD 269 361 IPR035979 GO:0003676
Alju06g2462 363 SUPERFAMILY RNA-binding domain, RBD 180 271 IPR035979 GO:0003676
Alju06g2462 363 Gene3D - 113 267 IPR012677 -
Alju06g2462 363 CDD RRM1_PSRP2_like 185 264 - -
Alju06g2462 363 MobiDBLite consensus disorder prediction 146 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2462 Alju-ChrAlju06 51619331 51622328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2462 166 360 Eukaryotic Initiation Factors Gene Family AT3G16380 34.804 9.50e-24 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2462 06 51619331 51622328 Alju13g1635 13 34547943 34549825 CCT
Alju06g2462 06 51619331 51622328 Alju13g1635 13 34547943 34549825 ECH
Alju06g2462 06 51619331 51622328 Alju06g2462 06 51619331 51622328 ECH