Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2454 ATGCAGAGTCCAAGTGCGGTTCCCTCCCTTTCTCTTTATATATACCCCTTTCCCTCCTTCACATTTCTCACACCACTCTCCACCTCACACACATACATTTTCCTCTGTTTCAAAATGACTAGCTTCTTCTTCTTCCTCTGTTTTTTCCTCATCCCTACACTCATTTCTTCTTCCCCTTTCCACGACCCTGAATCCATCGTCCAAGAGGTAAACAGGAAAATCAATGCCTCTGTTGCTAGGAGGAATTTGGGTTACCTCTCGTGTGGAACTGGAAATCCGATCGACGATTGCTGGAGGTGCGATCCTAATTGGGAGAAGAACAGGCAGAGGCTAGCCGATTGTGCGATAGGGTTCGGAAAGAACGCCATTGGCGGGAGAAACGGCCGGATTTACGTGGTGACCGACGCCGGCGACGACAATCCGGTGAATCCACAGCCGGGGACTCTCCGGTATGCCGTGATTCAAGACGAACCGTTGTGGATCATATTCGCTAGGGACATGGTGATTCAGTTGAAGGAGGAGCTGATCATGAATTCCTTCAAGACCATCGATGGACGAGGCGCCAGCGTCCACATTGCGGGTGGGCCCTGCATAACGATCCAGTACGTTACTAACATTATAATCCATGGAATCCACATACACGACTGTAAGCAGGGAGGGAACTCTATGGTGCGGAGCTCCCCACGGCACTACGGCTGGAGAACATTATCGGACGGTGACGGTGTCTCCATCTTCGGAGGAAGCCACGTGTGGGTAGATCACTGCTCGTTGTCGAACTGCAGGGACGGTTTGATCGACGCGATTATGGGGTCCACCGCGATAACCATTTCCAACAATTACATGACGCACCACGATAAGGTCATGTTACTGGGTCACAGCGATTCTTATACACAAGACAAGAACATGCAAGTCACCATCGCTTTTAATCACTTTGGAGAAGGCCTCGTCCAAAGAATGCCAAGATGCAGACTTGGATATTTCCATGTGGTGAACAATGACTATACACATTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCAACCATCAATAGCCAAGGCAATAGATTTGTGGCCCCCGATAACAGATTCAGCAAAGAGGTGACTAAACATGAGGATGCACCAGAGAATGAATGGAGGGGCTGGAATTGGAGATCAGAAGGGGACTTGTTGCTAAACGGTGCGTTTTTCAGGGCATCAGGTGCTGGAGCCTCTTCTAGCTATGCAAGGGCTTCTAGTTTAAGTGCTAGACCATCTTCTCTTGTGGGTGCCCTCACCTCTGGTTCTGGCACACTCACCTGTAGAAAAGGTTCTCGCTGCTGA 1323 0.4966 MQSPSAVPSLSLYIYPFPSFTFLTPLSTSHTYIFLCFKMTSFFFFLCFFLIPTLISSSPFHDPESIVQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGRNGRIYVVTDAGDDNPVNPQPGTLRYAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNSMVRSSPRHYGWRTLSDGDGVSIFGGSHVWVDHCSLSNCRDGLIDAIMGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAPENEWRGWNWRSEGDLLLNGAFFRASGAGASSSYARASSLSARPSSLVGALTSGSGTLTCRKGSRC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2454 440 Gene3D - 91 433 IPR012334 -
Alju06g2454 440 SMART amb_all 166 363 IPR002022 -
Alju06g2454 440 FunFam Pectate lyase 91 433 - -
Alju06g2454 440 SUPERFAMILY Pectin lyase-like 73 434 IPR011050 -
Alju06g2454 440 PRINTS Pollen allergen Amb family signature 340 359 IPR018082 -
Alju06g2454 440 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Alju06g2454 440 PRINTS Pollen allergen Amb family signature 238 259 IPR018082 -
Alju06g2454 440 PRINTS Pollen allergen Amb family signature 138 163 IPR018082 -
Alju06g2454 440 PRINTS Pollen allergen Amb family signature 318 337 IPR018082 -
Alju06g2454 440 PRINTS Pollen allergen Amb family signature 411 434 IPR018082 -
Alju06g2454 440 PRINTS Pollen allergen Amb family signature 114 131 IPR018082 -
Alju06g2454 440 PRINTS Pollen allergen Amb family signature 174 190 IPR018082 -
Alju06g2454 440 Pfam Pectate lyase 175 357 IPR002022 -
Alju06g2454 440 PANTHER PECTATE LYASE 18-RELATED 60 438 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2454 Alju-ChrAlju06 51574754 51577697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2454 43 440 Polysaccharide Lyase AT5G63180 81.250 0.0 674