Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2436 ATGCGAACAGGCGCCATCACCAAGGTATACTACATTTTCTTATGCTCCCTATTTCTTTGTTCAGTATCGGATGTGCATTTCCACCTTGAATGGCGGCATTCAGTTGATATTCCTATTTCGAAAACTCTCATAGCGTTGAGGAGAGTCAGGTCGTTGAGGGATCCATCTACAAATTCTATGAGCAAACTCTGTTCTTCGATTGATAATCTACACTGGGAAAACAGTTCAGGCAATGGGATTTCCCTGCGGTTCTTGGACGCTTCTCGCGCTTGTGATTCTGATGATAATGGTGCGTTAAGGTCAAAGAATTTAAGTTATGGCATTCGCAAAGAGCACGATGCTGCTGATTTTGAATTGAACAGTAGCCATTTCAACTCTAAACTGAAGTCTTGTCCTGAAGGGCAGCAGAATGAAGAACTAGCATACTCTAATTTGTATCAGGATGGCAATTCCGGAATTAAGTCGACAGGTGATAGCTGCTATAGCAACAATAGACGCAAGGAATTAGATATAGCATCTATTATGCCTCCTAGCAACGAGGCAACTTCTGGATCGTCAAAGTTAGGGGCAAATGATCATTCTATGTTGACTAGAAAACTTCAATGCAAGAATCAAGTGAAATCATCCGAAGTTGCGGGCGATATTGTGGGTCTTAGAGGCAGTCCGTGCCTTTCAGTCGGTGAAGCTTTCTCAGCTTATAGTTCTTCGGCTAATATGAATCAAGATGTAGATATTGTAGATGATAATCACCATGGATGTGGAATAAGCTGCTGTTGGTCAAAATCACCAAGGTTTAGAGAATCAAATGTATATTCAGATATAGAAGACCGTCCCCTCATAACCTGGCACACAGATGAGACAGCTCTTTATGGACATAAAAGCATGAGACACATTGGTGGTGAAATTAGTCCAAATTTTGAAACTCCTAGAAGTTTGTGTATGAAATTCAGGCCAAAATCTTTTAATGATTTGGTTGGACAAAATGTGGTAGCGAGGTCTCTTTTGGGTGCCATCTTTAAGGGAAGGGTAACCTCATTCTATCTTTTCCATGGTCCTCGTGGTACTGGCAAGACATCTGCATCTAGGATCTTCGCTGCTGCACTGAATTGTCTTTCCCTGGAGGAGGAAAGGCCATGTGGTCTGTGCAGAGAGTGTGTTTTATTCTTTTCTGGTAGAAGTAAAGATGTTAAAGAAGTTGATTCTGTGAGACTAAATCGTATTGACAAAGTAAAATCCCTTGTTAAGAGTGCAAGCATCCCTCCAGTTTCTTCATGTTTTAAGATATTTATTGTTGATGAGTGCCAGTTGATCCTCGGGGAGACATGGGCAAGTCTTTTGAATAGCCTAGAGAGCCTTTCTCATCATGTGGTTTTTATTATGATCACTCCAGACTTGGACAAACTTCCCCGAAGTGCAGTTTCCAGGGCCCAGAGGTATCACTTCCCTAAGATAAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGCCTAGAAGAAGGTCTTGATTTTGAACAGGATGCTTTGGACTTCATTGCTGCTAAATCCTGTGGTTCACTTAGGGATGCAGAAATCATGCTCGATCAGCTGAGCTTGCTCGGTAAAAAAATCAGAATTTCCTTGGCCTATGAGCTTACTGGTATCATTTCTGATGATGAATTGCTTGAATTATTGGATCTGGCTTTGTCCTCCGACACTTCAAATACTGTTAAAAGGGCGCGAGAGTTAATGAGATCAAGGGTGGATCCTCTACAACTTATATCGCAGCTTGCAAATCTCATTATGGACATTCTTGCGGGGAAATGTGATGGTGGTGGTTCTCGGGTCAGAATGAGGTTTTCTAGTAGTCATAAATCTGAAGCAGACCTTCAAAAATTAAATCATGCATTGAGAATACTTTCTGAAACGGAGAAGCAATTACGAATTTCCAAGAACCAAACAACGTGGTTCACAGTGGCACTTCTACAGTTAAGCTCTGCAGAACATTCTTCTGTTGATGCAAATGATACCAAATTAAGAGATGCATGCAATGGAGATGGTGATTTCTGCAGTACATCATCTACAGGGGATAGCAGGAAGCATCTTGCCTCTGCTCAGTATGATAACAAATTTAGATTAGGACAACAGGATGACACATTAAGTTCCATATGGTATAAAGCCACAGAGTCATGCCAATCTAACAGACTGAAGACTTTTCTTAGGAAACAGGGGAAGTTGTCTTCGCTTTCTGTTAATCGCGGTCTAGCAATTGCTGAGTTGGATTTCAAGCATCGCAGCTATGTATGTAGGGCTGAGAAGTCATGGAAAATGATTGCCAGTTCCCTGCAGCTCATATTAGGTTGTAACATAGAGCTCAGGATCAATCATGTACCTTTTACTTCTGATTCTAAATATACCAAGTTGAAGAGGTCATCTTTCAGTTTTTTTAGTTGTTCCCGTAGAATTCATCGAAAAGCACCCTCGGGTAATGAACAAGGAAGTGAACCAGACTACACTGATCACACCTCACAAAAAGCTATGACGAGGGACAGAACTGTAACTTGTACATCTGATTGTGGATCTCAGTTGCAAAAACCTGAGTCTTATCATCGAATGGAGGTTGTAGCAGCTTTGAGAGATGGTGAAGGAAATTTGCTGAGCTCAAGGAAGAGTTTGTTGAATGGTTCATGTCAAGAGACTTCAAGGACCTCAAGTTCTGGGGTTGACTCCTCTAAGGAAGAGGGGTTTGATTATGCGCACCTAGTCTCATCAAACCCTGATTCTGACTACCAATCAAAATGTTTCCCTCGAACCTTTTGGATTCATAAAAAGAAGTTACGTCCTCCAGATCTATCTCAGTTGGCTTTCGAGGGCACCCGGCAACAGAAAGAATTTGTTTTATCTATCCCAAATTATACCTGTTCTGAGACATATAGCTATGCTAGTGAACCATGTGTTTTCTCCACCAGCTCTAACAATTGTACCAAAGCCTCCCAAAATGAGAAAAGCCCGAAGTTGGATTCGGATATGCTTTGTTGGAGAACCCCAAGACCTCCCTTGAGGAAGATTTTAACCTTTGAAGTTTCGTCTACTCTGAAAATCAGTGTACTTTGCCTATATTGGCAGAGCACTTGTCTTTTAAAAGACAAGTCTCTTGAAAGTGGAGAAATTGTGGGATTTGGGTCTTCATGGCATGTGGGGCTTCAGCAGCATAAATCGCATTCAGCAGGGAGGTTTCTTTCCTGTGCCACTGCCAACGTAGATATTGCTGATTTAGTTTACAAAGGATAG 3270 0.415 MRTGAITKVYYIFLCSLFLCSVSDVHFHLEWRHSVDIPISKTLIALRRVRSLRDPSTNSMSKLCSSIDNLHWENSSGNGISLRFLDASRACDSDDNGALRSKNLSYGIRKEHDAADFELNSSHFNSKLKSCPEGQQNEELAYSNLYQDGNSGIKSTGDSCYSNNRRKELDIASIMPPSNEATSGSSKLGANDHSMLTRKLQCKNQVKSSEVAGDIVGLRGSPCLSVGEAFSAYSSSANMNQDVDIVDDNHHGCGISCCWSKSPRFRESNVYSDIEDRPLITWHTDETALYGHKSMRHIGGEISPNFETPRSLCMKFRPKSFNDLVGQNVVARSLLGAIFKGRVTSFYLFHGPRGTGKTSASRIFAAALNCLSLEEERPCGLCRECVLFFSGRSKDVKEVDSVRLNRIDKVKSLVKSASIPPVSSCFKIFIVDECQLILGETWASLLNSLESLSHHVVFIMITPDLDKLPRSAVSRAQRYHFPKIKDADIASRLEKICLEEGLDFEQDALDFIAAKSCGSLRDAEIMLDQLSLLGKKIRISLAYELTGIISDDELLELLDLALSSDTSNTVKRARELMRSRVDPLQLISQLANLIMDILAGKCDGGGSRVRMRFSSSHKSEADLQKLNHALRILSETEKQLRISKNQTTWFTVALLQLSSAEHSSVDANDTKLRDACNGDGDFCSTSSTGDSRKHLASAQYDNKFRLGQQDDTLSSIWYKATESCQSNRLKTFLRKQGKLSSLSVNRGLAIAELDFKHRSYVCRAEKSWKMIASSLQLILGCNIELRINHVPFTSDSKYTKLKRSSFSFFSCSRRIHRKAPSGNEQGSEPDYTDHTSQKAMTRDRTVTCTSDCGSQLQKPESYHRMEVVAALRDGEGNLLSSRKSLLNGSCQETSRTSSSGVDSSKEEGFDYAHLVSSNPDSDYQSKCFPRTFWIHKKKLRPPDLSQLAFEGTRQQKEFVLSIPNYTCSETYSYASEPCVFSTSSNNCTKASQNEKSPKLDSDMLCWRTPRPPLRKILTFEVSSTLKISVLCLYWQSTCLLKDKSLESGEIVGFGSSWHVGLQQHKSHSAGRFLSCATANVDIADLVYKG 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2436 1089 MobiDBLite consensus disorder prediction 818 842 - -
Alju06g2436 1089 Gene3D - 547 660 - -
Alju06g2436 1089 SMART AAA_5 343 486 IPR003593 GO:0016887
Alju06g2436 1089 NCBIfam DNA polymerase III subunit gamma/tau 311 657 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Alju06g2436 1089 Pfam DNA polymerase III, delta subunit 327 484 - -
Alju06g2436 1089 FunFam DNA polymerase III subunit gamma/tau 485 547 - -
Alju06g2436 1089 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 533 IPR027417 -
Alju06g2436 1089 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 312 725 - -
Alju06g2436 1089 SUPERFAMILY post-AAA+ oligomerization domain-like 548 659 IPR008921 GO:0003677|GO:0006260
Alju06g2436 1089 Gene3D - 485 546 - -
Alju06g2436 1089 CDD HLD_clamp_pol_III_gamma_tau 484 547 IPR045085 -
Alju06g2436 1089 Gene3D - 305 482 IPR027417 -
Alju06g2436 1089 FunFam Protein STICHEL-like 1 isoform C 548 661 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2436 Alju-ChrAlju06 51215985 51224016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2436 302 596 Core DNA Replication Machinery Family AT1G21690 24.080 1.41e-13 71.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2436 06 51215985 51224016 Alju06g2436 06 51215985 51224016 ECH