Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2429 ATGGTGGGTTCGGCAGCTCTGGCTCCAGAGCCAAACTCAGAGGTATTTTCATGGCTAAAATCTCTTCCTCTGGCCCCAGAGTACCGCCCTAGCTTGGCTGAGTTTCAAGATCCGATTTCATACATTTTTAAGATCGAGAAGGAAGCTTCCAAGTATGGAATCTGCAAAATTGTCCCCCCCGTGCTACCTTCTTCGAAGAAGACAGCAATTGCGAATCTTAATCGCTCGTTGGCAGCACGAGCTGCCTCCTCTGACTCTTCTAATTCGAAATCCCAGCCTACATTCACCACAAGGCAGCAGCAGATCGGGTTCTGCCCTCGGAAGCAACGACCAGCGCAGCGTCCTGTGTGGCAGAGTGGGGAATACTACACGTTTCAGGAATTTGAAGCTAAGGCCAAGGCTTTTGAGAAGAATTATCTGAAGAAATGGGCCAAGAAAGGTGGTCTTTCGCCTCTGGAGATAGAAACACTTTATTGGAAGGCGACAGTGGACAAACCCTTTTCCGTGGAGTACGCTAACGATATGCCTGGTTCGGCTTTTGTTCCCGTGAATGGGAGAAAATATAGAGAGGCAGGGGAGGGAACGACTCTTGGTGAGACTGCATGGAACATGAGGTTGGTGTCACGGGCAAATGGTTCTCTGCTGAAGTTTATGAAGGAGGAGATTCCAGGTGTTACATCACCAATGGTGTACGTAGCTATGCTGTTCAGCTGGTTTGCTTGGCACGCAGAGGATCATGACCTGCATAGCTTGAATTACCTTCATATGGGGGCAGGCAAGACGTGGTATGGCGTGCCACGGGATGCCGCTGTCGCATTTGAGGAAGTGGTCAGAATTCATGGGTATGGAGGAGAAATAAATCCTCTCGTTACTTTTGCTGTACTTGGGGAGAAAACCACAGTGATGTCGCCTGAAGTGTTTATTAGTGCAGGGGTTCCATGCTGCAGGTTAGTGCAACACGCTGGAGAATTTGTTGTCACATTTCCAAGAGCTTATCACACTGGATTTAGTCATGGATTTAATTGTGGGGAGGCAGCAAACATTGCGACACCTGAATGGTTGAGGGTTGCTAAAGATGCCGCTATTAGGAGGGCATCAATAAATTATCCGCCCATGGTTTCACATTTTCAGTTACTTTATGATCTTGCCCTGGCTTCGTGTTCAAGAATTCCTGGGGGCATCAATGCTGAACCACGGAGTTCTCGGCTTAGAGATAAGAGGAAAAGTGAAGGGGAAACTGTTATTAAAGAACGATTTGTCCAGGATGTGTTACTGAACAATGACTTGCTTCATGATCTTGGCAAAGGATCTGCTATAGTACTTCTTCCTCGGAGCTCTTCAGATATTTCTGTTTGCTCAAAATTACGTGTTGGTTCCCAGCAACTGAAGGTGAACCCTGGGTATTTTCTCAGAGAATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGACCTGGTTTTCAGCAGAACCACACAAGTGAAAGAATTTTCTGTAAAAGAGAAGTTTGCTTCTTTGTGTGAAAGGAACAGGGTCTCCTCATTAAGTGTAAATGATAACATATGCTCTTCAAGTTCTGTGCCACTTCAAAGAGACACTGAAAGAGAGACAAGCCAAGGGGATGGGTTGTCAGACCAGAGACTATTTTCATGTGTTACTTGTGGTATACTAAGCTTTGCTTGCGTTGCTATTGTGCAGCCTAAGGAACCAGCTGCTAGGTACCTTATGTCAGCTGATTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTAAGCATCAATAAGTATACACATGCCCTTGGAGATGCAACTACTTCTGAGAAAAGCACCTTTGCAGGATGGAAGGTCAAAAAGGCCCCAGACTATGATCTTCCTATTCAATCTGTAGGATACCAAATACAGGTGGAAGATCAATCACATGAGGTAGCTTTACGTACTAAAGGACAGAAAGAAACATCCGCCCTTGGCTTATTGGCATCAGCATATGGAAATTCATCTGATTCAGAGGAAGATCAACTTGACCTAGGTATTGCAGTTCATGATAACGAATCTAATGTTATGGACCGTCCATCAGGTGGTATATCTCAGAATATGTCTAGCTTGCCTTCTCTTTTCCAAGATTGCAATGCAAGTGCAGTCAGGGTTCATGGTGATTATGGGCAGAAAGCAAACCCAGAAGGTTGTGATACCACTTCAGGGACTGCATTTAAGAATACGAGTTGCACCTTAAATTATTCTCAAGATGTTCATGAAGCCGAAACATCAATGCTTGGTAACACTGGATGTCCCATTGATGATAGAAGTGCTTCATTGTTGCCAAATTCTGATGAAGATTCATCTAGATTGCATGTCTTCTGTCTGGAGCATGCTGCTGAAGTGGAGCAGCGACTTCACCCAATAGGAGGGGCACACATATTACTCCTTTGTCATCCAGATTATCCCAAGGTAGAGGCTGAAGCAAAAAATGTGGCTGAGGAACTGAATATTGATGGCATATGGAAGAATCTTTCTTACAGAAATGCCACCCCGGAAGATGAGGAGAGGATCCAGTCGGCTCTGGATAGTGAGGAAGCTATTCCCGGAAATGCGGACTGGGCTGTAAAGCTCGGAATCAATCTCTTCTATAGTGCCAATCTCAGCCGCTCTCCTCTCTACAGTAAGCAGATGCCCTATAATTCTGTCATATATTATGCATTTGGCCGTAGTGCTCCAGCAAGCTCACCCACAGAACCCAAGGTTTACCGAAGAAGGACCAGCAAACAGAAAAAGGTGGTTGCTGGAAGATGGTGTGGCAAAGTTTGGATGTCCAATCAGGTCCATCCCCTTTTAGCTAAAAGAGATTCTGAGGATGATGATGAGAAAATCTTACATGGGTGGTCGTTGCCTGACAAGAAAATTGAGAGATCAGAAAGTGCCCCCACTGACAATTTTAGTAATAGAAAATCTGCTAAGAAAAGGAAAATGACTGTAGAGAGTAGAAAAGCTGGGAAAGCCAGTTTTGCTGAGAGAGAATATGTTTCTGATAATTCTATTGAAGAGAAATACAACCCACAGCAAAGGACATATTCTAGAACCAAGCAAGCCAAATATTTTGACAGAGATGATGTAGCGTCAGAAGAGTATTATTCTCCTGTGCAGCAATATGGAAAACCTACAGCAAAGCAAGCCAAATACACCGAAAGTGATGAAGTTTCAGATGATTCCATGGATGATAATTCTCACATGCAGCGGGGAAGGAATTTTAAAGTCAAAGAACCTAAATTCGTTGACAGTGATGTTATCTCAGATGATACAATGGGATATGATTCTGGTTCACAACTGAGGAGAGAGCTTAGCAATAAACATATTGAAGACTCAGAAAGAAATGGAGTTTCAGAGGATTCCATGGGCGGTAGTTCTCTGAAGCAGCGGAGGAAAACTTGTAAAAGCAAGCCAGCCAAATATGTTGCTAAAGATGTAATTTCTGATGACCAAATGGAGGATCACTTTCAGAATCAGCAAAGAAGGATTCCTAAAAGCAGACGAGCCAAATACCTTCATGGAGAAGATATCATGGTATCTGATGACCAACTGGAGCATCGAATACATAGGCAGCAACGATCTAAAGGAAGGCGAGCCAAACACTTCATTGGAGACAATATTACATCTGATGACCAACTAGAGGACCGTTCTGGGAAGTGTAATAGAAGGATTCCTAAAAGCAGACAAGGTAAATGCCTAGTCGAGGAGGATGTGATATCTGATGACCAATTGGAGGATCAATTCCGGAAGCCACGTGGTACTATTCAAAAGAGCAGGCAAAATAAACGCAAGAATAAAGTTATGGCTGGCTCATCTGATAACTATACTCATCTGCTGCATAGAACTCCTAAGAGGAAGCAAGTTAAAAGCATGGATGAAGAAGACATAGATTCTGATGATCAAATGGAGGATTCATCTCTTCAGCAGCGAAGAAGGACACTTCGAAGCCAGCAATCTAAATTAGAGGCACATCAACAAATGAAACAATCTATCTCCTGCCGTGTGAAACAACAGACATCCCGACCTCTAAAACGAAGCACTCAGCTACCAGTAAAATCAAAGACTTCTCAGAAAATGAAGCAGCCTCCCCGAGTGCAGAAAAATCAACCTGACAAGTTCAGAGATTTTAGCATGTGTTCAGAGGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGGAAAAGAGTACCAAAAGTTGAGGAGTTTGAAGCAAAACCAAAAGGAAAGGTAACCCAAAGGAAGAAGGCGAACAATGCTACAGCTCTGAAGGTTTCCAAAACGAAGGATGAGGAAGTAGAGTATGAGTGTGATATTGATGGGTGCACAATGAGTTTTGGCTCAAAACAGGAGCTAGCAGTGCACAAGAGAAACATTTGTCCTGTAAAAGGATGCGGAAAGAAATTTTTCTCACATAAATATCTGGTGCAGCACCGTCGAGTTCACGAGGATGATCGCCCTCTGAGGTGCCCTTGGAAGGGCTGCAAGATGACCTTCAAGTGGGCATGGGCCCGTACTGAGCATATTCGAGTGCATACCGGAGCTCGTCCATATGTTTGTGCTGAGCCAGGGTGTGGCCAAACATTCAGATTTGTTTCTGATTTCAGTCGCCACAAGCGAAAGACCGGCCATTCAACAAAGAAGAGTCGTTAA 4683 0.441 MVGSAALAPEPNSEVFSWLKSLPLAPEYRPSLAEFQDPISYIFKIEKEASKYGICKIVPPVLPSSKKTAIANLNRSLAARAASSDSSNSKSQPTFTTRQQQIGFCPRKQRPAQRPVWQSGEYYTFQEFEAKAKAFEKNYLKKWAKKGGLSPLEIETLYWKATVDKPFSVEYANDMPGSAFVPVNGRKYREAGEGTTLGETAWNMRLVSRANGSLLKFMKEEIPGVTSPMVYVAMLFSWFAWHAEDHDLHSLNYLHMGAGKTWYGVPRDAAVAFEEVVRIHGYGGEINPLVTFAVLGEKTTVMSPEVFISAGVPCCRLVQHAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALASCSRIPGGINAEPRSSRLRDKRKSEGETVIKERFVQDVLLNNDLLHDLGKGSAIVLLPRSSSDISVCSKLRVGSQQLKVNPGYFLRECNSEGMNSSKGFVSDDLVFSRTTQVKEFSVKEKFASLCERNRVSSLSVNDNICSSSSVPLQRDTERETSQGDGLSDQRLFSCVTCGILSFACVAIVQPKEPAARYLMSADCSFFNDWVVGSGVSINKYTHALGDATTSEKSTFAGWKVKKAPDYDLPIQSVGYQIQVEDQSHEVALRTKGQKETSALGLLASAYGNSSDSEEDQLDLGIAVHDNESNVMDRPSGGISQNMSSLPSLFQDCNASAVRVHGDYGQKANPEGCDTTSGTAFKNTSCTLNYSQDVHEAETSMLGNTGCPIDDRSASLLPNSDEDSSRLHVFCLEHAAEVEQRLHPIGGAHILLLCHPDYPKVEAEAKNVAEELNIDGIWKNLSYRNATPEDEERIQSALDSEEAIPGNADWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSAPASSPTEPKVYRRRTSKQKKVVAGRWCGKVWMSNQVHPLLAKRDSEDDDEKILHGWSLPDKKIERSESAPTDNFSNRKSAKKRKMTVESRKAGKASFAEREYVSDNSIEEKYNPQQRTYSRTKQAKYFDRDDVASEEYYSPVQQYGKPTAKQAKYTESDEVSDDSMDDNSHMQRGRNFKVKEPKFVDSDVISDDTMGYDSGSQLRRELSNKHIEDSERNGVSEDSMGGSSLKQRRKTCKSKPAKYVAKDVISDDQMEDHFQNQQRRIPKSRRAKYLHGEDIMVSDDQLEHRIHRQQRSKGRRAKHFIGDNITSDDQLEDRSGKCNRRIPKSRQGKCLVEEDVISDDQLEDQFRKPRGTIQKSRQNKRKNKVMAGSSDNYTHLLHRTPKRKQVKSMDEEDIDSDDQMEDSSLQQRRRTLRSQQSKLEAHQQMKQSISCRVKQQTSRPLKRSTQLPVKSKTSQKMKQPPRVQKNQPDKFRDFSMCSEEEEEGGPSTRLRKRVPKVEEFEAKPKGKVTQRKKANNATALKVSKTKDEEVEYECDIDGCTMSFGSKQELAVHKRNICPVKGCGKKFFSHKYLVQHRRVHEDDRPLRCPWKGCKMTFKWAWARTEHIRVHTGARPYVCAEPGCGQTFRFVSDFSRHKRKTGHSTKKSR 1560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2429 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1470 1492 IPR013087 -
Alju06g2429 1560 Gene3D Classic Zinc Finger 1419 1467 - -
Alju06g2429 1560 ProSiteProfiles JmjN domain profile. 25 66 IPR003349 -
Alju06g2429 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1468 1504 IPR036236 -
Alju06g2429 1560 Gene3D Cupin 18 369 - -
Alju06g2429 1560 SMART c2h2final6 1445 1467 IPR013087 -
Alju06g2429 1560 SMART c2h2final6 1528 1554 IPR013087 -
Alju06g2429 1560 SMART c2h2final6 1468 1492 IPR013087 -
Alju06g2429 1560 SMART c2h2final6 1498 1522 IPR013087 -
Alju06g2429 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1500 1522 IPR013087 -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 1112 1128 - -
Alju06g2429 1560 FunFam Probable lysine-specific demethylase ELF6 18 369 - -
Alju06g2429 1560 FunFam Probable lysine-specific demethylase ELF6 1495 1524 - -
Alju06g2429 1560 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 1494 - -
Alju06g2429 1560 SMART JmjN_1 24 65 IPR003349 -
Alju06g2429 1560 SMART cupin_9 196 365 IPR003347 -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 1201 1241 - -
Alju06g2429 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1498 1527 IPR013087 -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 1314 1329 - -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 1209 1241 - -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 81 107 - -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 1044 1149 - -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 1060 1096 - -
Alju06g2429 1560 ProSitePatterns Zinc finger C2H2 type domain signature. 1530 1554 IPR013087 -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 1330 1375 - -
Alju06g2429 1560 FunFam Probable lysine-specific demethylase ELF6 1525 1554 - -
Alju06g2429 1560 Pfam JmjC domain, hydroxylase 229 347 IPR003347 -
Alju06g2429 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1528 1559 IPR013087 -
Alju06g2429 1560 SUPERFAMILY beta-beta-alpha zinc fingers 1508 1552 IPR036236 -
Alju06g2429 1560 SUPERFAMILY Clavaminate synthase-like 211 377 - -
Alju06g2429 1560 ProSiteProfiles Zinc finger C2H2 type domain profile. 1468 1497 IPR013087 -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 81 106 - -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 1255 1385 - -
Alju06g2429 1560 MobiDBLite consensus disorder prediction 971 999 - -
Alju06g2429 1560 Gene3D Classic Zinc Finger 1468 1552 - -
Alju06g2429 1560 Pfam jmjN domain 26 59 IPR003349 -
Alju06g2429 1560 ProSiteProfiles JmjC domain profile. 199 365 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2429 Alju-ChrAlju06 51166558 51175915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2429 1126 1559 C2H2 Transcription Factor Family AT3G48430 36.534 8.92e-69 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju06g2429 JmjC 3.7e-35 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2429 06 51166558 51175915 Alju06g2429 06 51166558 51175915 ECH