Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2426 ATGGAGTCTTCTGAACCAGAATCAACTGCAATTTCGAATTCCAACGGGAACCCAGACTTGGGCTTCGGCTCGGTCTCATCTTTCCCTAGTTCTGATCACGCTTCGGAAACCTCAAATCTTAATCAGCAAGCTGAGGTCGATGCACTTCATGAGGAGTTTCAGAAGAAGCTGATTTTGAAGGATAAGGATGAAGAGGGAGAGACTGTGAACAAAGATGATAAGTTTGATGGTAGTGAGGAAGTGAGTGATAAACACGTTGCTGAGGAATCTTATGTGGTAGATGGGTGGGGTGAATATAATGATAATTGGAATGAAAATGAGGACAATAATTGGATTGCGAATGTGAGCGGGAATGAGAATGATGAGGAAGGTGGAGATTATGATCAAGCTGTCCATGAAGCGGAGAGAAGGCAAGAAACAAGCGGTGGTAGCAACCACCAGTATCCGTTGAGGCCCGAAGCAGAAGATTGTGCATTCTATCTGAAAACTGGAACTTGCAAATTTGGATTCAATTGCAAGTTTAATCACCCTGTTAATAGGAGGAAAAATCAGGCTGGTAAAGAGAAGGCAGGAGAGATAGAAGAATCAGCAGATAAATCAGCGCAGGCAGAATGCAAGTATTATCTATCATCAGGAGGATGTAAGTTTGGAAACGCTTGTAAATATAACCATTCAAGAGGAAAGTGTTTAGTAGTTCCAGTTCTAGAGCTTAATTTTCTTGGTCTGCCAATTCGTCTGGGGGAGAAAGAGTGCCCTTATTACATGCGTACTGGCTCTTGTAAGTTTGGAACAAACTGCAAATTTAATCATCCAGATCCTACAGTTGTTGGAAGAGGCGATCTTCCTGCGACATACGGTAATGGTGGGTCTATATCATTACAAGGTATCTCACAACCAGGGTCTATATCATTACAAGGTATCTCACAACCATCTGCACCCTCCTGGTCTTCTACAAGAACATTAAATGAAACTGCTGCTTTTATGCCAATGATGTTGTCACCTGGTCAAGGCGTTCCTCCCCAAAGTTCCGAATGGAATGTGTATCAGGCACCTGTCTACCTACCTGAGGGGAGCATGCGCCCACATTCTGCATATATTATGAACAACCCAGCGATTGAGAAAAATATTTATATGCAACATCAAAAGAAGATGCAGGTTGAAGAGTTTCCTGAAAGGCCTGGGGAGCCTGAATGCAGTTTCTTCTTAAAAACTGGGGATTGCAAATTCAAATCTAATTGTAAATTTCACCATCCAAGGAATCGGCTTACAAAGTTAGCTTCTGCTACATGCACCCTCAGTGACAAGGGTCTTCCTTTGAGACCTGACCAGAATGTATGCACGCATTACAGTCGCTACGGTATCTGCAAATTTGGACCTGCATGTAAGTTTGACCACCCAATAAACCAATCGCTCTCTTTAGGGCCTTCCCTTGATCAGTAA 1440 0.4292 MESSEPESTAISNSNGNPDLGFGSVSSFPSSDHASETSNLNQQAEVDALHEEFQKKLILKDKDEEGETVNKDDKFDGSEEVSDKHVAEESYVVDGWGEYNDNWNENEDNNWIANVSGNENDEEGGDYDQAVHEAERRQETSGGSNHQYPLRPEAEDCAFYLKTGTCKFGFNCKFNHPVNRRKNQAGKEKAGEIEESADKSAQAECKYYLSSGGCKFGNACKYNHSRGKCLVVPVLELNFLGLPIRLGEKECPYYMRTGSCKFGTNCKFNHPDPTVVGRGDLPATYGNGGSISLQGISQPGSISLQGISQPSAPSWSSTRTLNETAAFMPMMLSPGQGVPPQSSEWNVYQAPVYLPEGSMRPHSAYIMNNPAIEKNIYMQHQKKMQVEEFPERPGEPECSFFLKTGDCKFKSNCKFHHPRNRLTKLASATCTLSDKGLPLRPDQNVCTHYSRYGICKFGPACKFDHPINQSLSLGPSLDQ 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2426 479 Gene3D - 189 275 - -
Alju06g2426 479 SMART c3hfinal6 199 226 IPR000571 GO:0046872
Alju06g2426 479 SMART c3hfinal6 245 272 IPR000571 GO:0046872
Alju06g2426 479 SMART c3hfinal6 392 419 IPR000571 GO:0046872
Alju06g2426 479 SMART c3hfinal6 151 178 IPR000571 GO:0046872
Alju06g2426 479 SMART c3hfinal6 440 467 IPR000571 GO:0046872
Alju06g2426 479 MobiDBLite consensus disorder prediction 48 86 - -
Alju06g2426 479 MobiDBLite consensus disorder prediction 1 86 - -
Alju06g2426 479 SUPERFAMILY CCCH zinc finger 203 228 IPR036855 GO:0046872
Alju06g2426 479 ProSiteProfiles Zinc finger C3H1-type profile. 199 227 IPR000571 GO:0046872
Alju06g2426 479 ProSiteProfiles Zinc finger C3H1-type profile. 245 273 IPR000571 GO:0046872
Alju06g2426 479 SUPERFAMILY CCCH zinc finger 150 180 IPR036855 GO:0046872
Alju06g2426 479 SUPERFAMILY CCCH zinc finger 246 273 IPR036855 GO:0046872
Alju06g2426 479 SUPERFAMILY CCCH zinc finger 438 466 IPR036855 GO:0046872
Alju06g2426 479 ProSiteProfiles Zinc finger C3H1-type profile. 440 468 IPR000571 GO:0046872
Alju06g2426 479 ProSiteProfiles Zinc finger C3H1-type profile. 392 420 IPR000571 GO:0046872
Alju06g2426 479 PANTHER PROTEIN PHOSPHATASE RELATED 59 468 - -
Alju06g2426 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 248 271 IPR000571 GO:0046872
Alju06g2426 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 177 IPR000571 GO:0046872
Alju06g2426 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 394 419 IPR000571 GO:0046872
Alju06g2426 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 443 466 IPR000571 GO:0046872
Alju06g2426 479 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 203 226 IPR000571 GO:0046872
Alju06g2426 479 Gene3D - 392 473 - -
Alju06g2426 479 MobiDBLite consensus disorder prediction 1 45 - -
Alju06g2426 479 SUPERFAMILY CCCH zinc finger 397 422 IPR036855 GO:0046872
Alju06g2426 479 Gene3D - 118 188 - -
Alju06g2426 479 ProSiteProfiles Zinc finger C3H1-type profile. 151 179 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2426 Alju-ChrAlju06 51153725 51156900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2426 388 473 C2H2 Transcription Factor Family AT3G02830 47.674 7.97e-20 89.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju06g2426 zf-CCCH 1.8e-08 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2426 06 51153725 51156900 Alju06g2426 06 51153725 51156900 ECH