Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2422 ATGAGAAAAAAGTGTGTGGACTGTGCCCAGAAGCGTCCTTCGGTTCACGGAAAGAAGAAGGCATCGTCAAATGTACCTTCTTCCTTCTTCAAGGTCATGATTGGCAGCGATTTTTCTAGCGTTTTGTATCTGCCTCCTAAGTTTGGTCCTACAGCGTCAACCTTGATTGACAAAGAAGCCATTATTGAGGATTCAAGTGGAAAGCAATGGACGGTACAAATATCAATTGTCGATAAGTCTTATGCTTTTCAGGAGGGATGGAAAGCTTTTTCGTTGGAACATGGGCTTGAAGTTGGACATTTTTTGGTTTTCCATTACATGGGAAGATCTCACTTTGTTGCTAAGGTTTTTGATAAATCTGGTTGTGAAAAAACTGATTTTCCCAATCAGGGAAAGCAGAAGAGAAAAACGATCACAGTTGACCTTGATGATAGCGATGAATTGTTAAATAGACAAGGTTTATTATCCTCGGAGTCAGACGCGGGGAAGACGCAAAGCCAGGACGAGTTTGTTCACATAGCAGAAATTAACGAAGAGAAAACCTCAGAAAATAGTAATAGTAACAGAAGGATCCGATCTCTGAACGAAGACAAAAACTATGAAGATCCTTGTTACTTGAAAGACCGAGTCTTTGTAGACAAAGAAAGAGAGGACAGGGATAGTCTTATATTTGATGCGTTCAGGTGTGAAATATTGAACAATTCAGGTGTTCACAGGACTGGCAAATTTACAAGCAGCAATGAAATAGTTGTTTCAAGTATCTATACCAAAGATCCTTTGCTTGAAGAGATGTTGGGTAATGGAGCAACTCAAGATCGGTTTGAAGTTGAATTGACCGAAAGAAGTCATTTTCTTGAAGAGTTAGACAAGAGTACATTCTCCTGTGAGAGACATTCTCGTGAAAACAAGATTCCTGAGCATCTTTTGATCCCATGTACCATGCAACATGAAGAAATCAAAGAGAACTCAGTTACAGGGCAAATGGAGAGAATGATTCAAAAAGAGCTTCTGGACATGACTCCAGGTGTGTGCATGTACAATGATCAACTCCAGACACTTATTGGAGATCAAAGCAGCTATCTAAATTCAGTGAAAGCTGTACCTTCCGACTGTGGAGCTGCCCACATGCTTGCATCCATCTCAGAGACAGACAGTAAAGACAATGCGACTGGTGGCGCTCCGGAGGAGACAATGACCGATCCTTTACCGTGA 1212 0.4117 MRKKCVDCAQKRPSVHGKKKASSNVPSSFFKVMIGSDFSSVLYLPPKFGPTASTLIDKEAIIEDSSGKQWTVQISIVDKSYAFQEGWKAFSLEHGLEVGHFLVFHYMGRSHFVAKVFDKSGCEKTDFPNQGKQKRKTITVDLDDSDELLNRQGLLSSESDAGKTQSQDEFVHIAEINEEKTSENSNSNRRIRSLNEDKNYEDPCYLKDRVFVDKEREDRDSLIFDAFRCEILNNSGVHRTGKFTSSNEIVVSSIYTKDPLLEEMLGNGATQDRFEVELTERSHFLEELDKSTFSCERHSRENKIPEHLLIPCTMQHEEIKENSVTGQMERMIQKELLDMTPGVCMYNDQLQTLIGDQSSYLNSVKAVPSDCGAAHMLASISETDSKDNATGGAPEETMTDPLP 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2422 403 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Alju06g2422 403 Gene3D - 21 122 IPR015300 -
Alju06g2422 403 SUPERFAMILY DNA-binding pseudobarrel domain 27 122 IPR015300 -
Alju06g2422 403 CDD B3_DNA 28 118 IPR003340 GO:0003677
Alju06g2422 403 PANTHER B3 DOMAIN-CONTAINING 24 197 - -
Alju06g2422 403 Coils Coil 177 197 - -
Alju06g2422 403 SMART B3_2 29 120 IPR003340 GO:0003677
Alju06g2422 403 MobiDBLite consensus disorder prediction 382 403 - -
Alju06g2422 403 Pfam B3 DNA binding domain 29 119 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2422 Alju-ChrAlju06 51072705 51075589 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2422 29 164 B3 DNA Binding Superfamily AT5G66980 30.000 2.33e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju06g2422 B3 1.2e-15 CL0405