Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2347 ATGTCAGGCAACAAGTGGGTGGTGAAAGAAACAACTAACAAGCTGGGGAGCATTATGGAGTGGAATATGAAGGAAGCAACATGGGATCTGGCTGAATTAGACGAAGCAACGGGCTTACCCAACATAGAAGAAACAATTGATGGGTCAAGCAGATTTGGAAGTTGTGATAGAAGTAATAAAGGGGAATTTTCTGTGGATTTGAAGCTTGGTCAAGTGGGGAATTCTAGTAGTAGTAATAATGAACCAGTAGCAGCAGTTGTAGTGGCCAATAAGTGGAAAGATGTTGTTGGAGGAGTCTCCAAAGTGATGATGACATCTTCTTCTTCTTCGCCGTCGTCTTCTTCCTCGGGATCATCTAAGAGAGCTCGAGCCATTAACAATGGAAACCAGACAGCGTCATGTCTTGTGGATGGGTGCAATTCAGATCTTAGTAATTGTAGGGACTATCACAGACGCCATAAGGTCTGTGAACTCCATTCTAAGACCCCGGTGGTCAGAATTGGTGGCCACAAGCAAAGGTTCTGTCAACAATGTAGCAGGTTTCATTCGCTGGAGGAGTTTGACGAAGGGAAGAGAAGTTGCAGGAAGCGATTAGATGGACACAACCGACGGAGGAGGAAGCCACCGCAGGCGGCGGCAGAAGGGGTAGGGGGAAGATGTGGAAGCTTTTTGTCCAATTACCAACAAGGCACCCACCACTTGTTGCCCTTCTCAAGCTCACATTTGTATCCTTCCACTGTTGCTATGGCTCGCCCGGGTTGGAATACAGATGTTAGGCTTCACCAACTTCATCATAATCACTTGGTTGATCACAAACAGGACCTTTTTCTAGGATCTTCGCCCTCGTCGTCATCTTATACAGAAGCAAACAACAACAACAACAAGAAGCAGCAGCTAGCATTCTTGCAAGTTGGTCACAACTTAACAGTAACAATGGAGGACAACCAGAGTAGCAACCACCAGGCTCTGCCAGTACCACCACTACCTACGTTTCTGAGAGCGGCGCCATTATTGCCGGCAGCTCCACTTCACGGGGGCGGCGGCGACCACCACCATGACTCTCACTGTGCTCTCTCTCTTCTGTCATCCTCACAGACGCACACAAGTGAGAGTGGTTTGAGCCAAATGATGCAACCTCATCATCAACATCAACAGCAACAAGCCATGTCAATTATGCAGCAGCACCAACCCTTAGGACTGAGCCTCCATGATCATGGCCTGGAGACGGTGGATCCGGTCATGGTTCACCATGGGAGTGACCATTCTCCGACGACTACGTATAACATGAACGAGACTCCTCCTCCATTTCCTTTTCATTGGGACTAG 1326 0.4811 MSGNKWVVKETTNKLGSIMEWNMKEATWDLAELDEATGLPNIEETIDGSSRFGSCDRSNKGEFSVDLKLGQVGNSSSSNNEPVAAVVVANKWKDVVGGVSKVMMTSSSSSPSSSSSGSSKRARAINNGNQTASCLVDGCNSDLSNCRDYHRRHKVCELHSKTPVVRIGGHKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPPQAAAEGVGGRCGSFLSNYQQGTHHLLPFSSSHLYPSTVAMARPGWNTDVRLHQLHHNHLVDHKQDLFLGSSPSSSSYTEANNNNNKKQQLAFLQVGHNLTVTMEDNQSSNHQALPVPPLPTFLRAAPLLPAAPLHGGGGDHHHDSHCALSLLSSSQTHTSESGLSQMMQPHHQHQQQQAMSIMQQHQPLGLSLHDHGLETVDPVMVHHGSDHSPTTTYNMNETPPPFPFHWD 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2347 441 MobiDBLite consensus disorder prediction 198 217 - -
Alju06g2347 441 MobiDBLite consensus disorder prediction 103 123 - -
Alju06g2347 441 SUPERFAMILY SBT domain 133 210 IPR036893 GO:0003677|GO:0005634
Alju06g2347 441 Gene3D - 125 195 IPR036893 GO:0003677|GO:0005634
Alju06g2347 441 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 81 414 IPR044817 GO:0003677
Alju06g2347 441 FunFam Squamosa promoter-binding-like protein 14 125 195 - -
Alju06g2347 441 Pfam SBP domain 134 207 IPR004333 GO:0003677
Alju06g2347 441 ProSiteProfiles Zinc finger SBP-type profile. 131 208 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2347 Alju-ChrAlju06 50172157 50175614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2347 19 303 SBP-box Gene Family AT5G50670 46.102 6.94e-63 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Alju06g2347 SBP 1.4e-30 No_clan