Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2331 ATGGAAAAGATGAACTTTGTTAGAAATGGAGTGAGTAGATTGCCTCCTGGTTTTCGATTCCAGCCAACGGATCAAGAACTTGTGTTTCAGTACTTGAAATGCAAGATCTTCTCTCTTCCCTTGCCTGCTTCCATTATTCCTGAACTCAATCTCTGCAACTTCGATCCTTGGGATTTACCAGGCAATTGTGACCAGGAAGAGAGGTACTTTTACAGTCCAAAGGAAACAAAATATCGAAATGGGAATCGCATGAACCGAACAACCATCTCTGGGTATTGGAAGGCAACAGGATCAGACAAGAGAATAACTTGTTCCACAAGAAACAACAATGACGTCGTAGGCATAAGAAAAACCCTTGTTTTTTACCAAGGAAGTTCCCCAAACGGCTCTAAAACTGATTGGATCATGCACGAGTATCGCCTAGTCTCTGCTGCTGCTTCTTCTTCTTCTTCTTCTTCCTCCAAGTCTGAGGAGGTCGGAGACTGGGTTCTCTGTCGAATATCCCTCAAGAAAACTAATAATAATAATGGTGGTGATACGAGGAGGAGTCAAGTGCAGAATAATCATAATAATAATAATGGACAGGACATGAATGAACAAGAAGAAACAAGTGGATATGCAGAAACATTGATCTCTATGAAGGAAAATGTATCATCAGTTCAGTGTTCTTCAATTAATCTTCATCTCTCGCAAGCTGCCACTGTTTTTATTTGCCTCCAATTAAAAGAACAGGATAACTATACTGTTTCATTGCCTCGTGGGCTTAATGGGCCCATAGGGTGTGTGACTGTGGATATAGAGAGCGACAGAGATTTTATAACAAAGGAAAGTGAAAAAGTTTCAACTTTATTCCTCTTTCTTTCTGCTTCCTCTCCGTTGAAATTGAAGATGATCGACTTTTCTCGCGTCCAGAAGGAGCTCGTCGAATGTGGCAAGGATGTCGAGGGTTCCGGCATCAAGCTTAACATCAAAGGCGACAGCCTTGCGCGCTTGATCGGAACCATTCCTGGTCCAATTGGAACTCCCTATGAAGGGGGCATTTTCAAAATTGACATTACCATACCCGATGGCTACCCCTTTGAACCTCCCAAAATGCAGTTTGCGACCAAAGTCTGGCACCCTAACATTAGCAGCCAGAGTGGAGCTATTTGCCTGGACATCTTGAAGGATCAATGGAGCCCTGCACTGACACTGAAAACCGCCCTGCTTTCTGTGCAAGCCCTTCTCTCTGCTCCTGCACCTGATGATCCTCAAGATGCTGTTGTAGCACAACAGTATCTCAAAGACCACCAGACATTTGTTGGCACCGCTCGGTACTGGACTGAAGCTTTTGCCAAGGCATCATCTCTTGGGATTGAAGATAAGGTAAAGAAGCTGGCAGAGATGGGATTCCCTGAAGCTCAGGCGAGGAGTGCATTAGATGCTGTTGGTGGTGATGAAAACTTGGCTCTTGAAAGGCTTTGCTCTTAG 1470 0.4415 MEKMNFVRNGVSRLPPGFRFQPTDQELVFQYLKCKIFSLPLPASIIPELNLCNFDPWDLPGNCDQEERYFYSPKETKYRNGNRMNRTTISGYWKATGSDKRITCSTRNNNDVVGIRKTLVFYQGSSPNGSKTDWIMHEYRLVSAAASSSSSSSSKSEEVGDWVLCRISLKKTNNNNGGDTRRSQVQNNHNNNNGQDMNEQEETSGYAETLISMKENVSSVQCSSINLHLSQAATVFICLQLKEQDNYTVSLPRGLNGPIGCVTVDIESDRDFITKESEKVSTLFLFLSASSPLKLKMIDFSRVQKELVECGKDVEGSGIKLNIKGDSLARLIGTIPGPIGTPYEGGIFKIDITIPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPAPDDPQDAVVAQQYLKDHQTFVGTARYWTEAFAKASSLGIEDKVKKLAEMGFPEAQARSALDAVGGDENLALERLCS 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2331 489 Gene3D - 445 489 - -
Alju06g2331 489 Gene3D Ubiquitin Conjugating Enzyme 297 444 IPR016135 -
Alju06g2331 489 CDD UBA_II_E2_UBC27_like 453 488 IPR041974 -
Alju06g2331 489 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 372 388 IPR023313 -
Alju06g2331 489 SUPERFAMILY UBC-like 297 446 IPR016135 -
Alju06g2331 489 SUPERFAMILY NAC domain 8 170 IPR036093 GO:0003677|GO:0006355
Alju06g2331 489 ProSiteProfiles NAC domain profile. 14 170 IPR003441 GO:0003677|GO:0006355
Alju06g2331 489 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 451 489 IPR015940 -
Alju06g2331 489 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 298 446 IPR000608 -
Alju06g2331 489 SMART uba_6 452 489 IPR015940 -
Alju06g2331 489 MobiDBLite consensus disorder prediction 173 204 - -
Alju06g2331 489 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Alju06g2331 489 CDD UBCc 301 441 IPR000608 -
Alju06g2331 489 Gene3D NAC domain 23 175 IPR036093 GO:0003677|GO:0006355
Alju06g2331 489 SMART ubc_7 301 446 - -
Alju06g2331 489 FunFam ubiquitin-conjugating enzyme E2 27 297 448 - -
Alju06g2331 489 PANTHER NAC TRANSCRIPTION FACTOR 56 14 204 - -
Alju06g2331 489 Pfam Ubiquitin-conjugating enzyme 302 440 IPR000608 -
Alju06g2331 489 Pfam UBA/TS-N domain 453 487 IPR015940 -
Alju06g2331 489 SUPERFAMILY UBA-like 453 489 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2331 Alju-ChrAlju06 49888793 49895166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2331 1 175 NAC Transcription Factor Family AT5G13180 60.571 2.90e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju06g2331 UQ_con 1.4e-40 CL0208