Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2317 ATGATTTCTGGAGTGAGCGGCGTCGCTTGGATGGACGAAAACAGAGAAGGAGATGACTCTACTGCTCCATCTTCATGGGCTAACGTGAACGCCAACATTCACATCGACAAAAACCAAAACCAGAGCCATTCTGGTTTTGTCCAGAACAAAGACGAGATGGGTTCGCTGTGTTCTTACAAACCCATTCTAGAAATCGATGACGATTGGTACATCGCCGCCAACAATGGCATCCAAAATCAACCAGATATTATCAGAGACATCACTTTCTCTCCCAACTTCGCCGACCAAGATAATTTATTGCTGAACCCAGTGGATTCATCCTCCTCGGGTTCCCCATCTAACACCGTCTTCAACAATCTCGACCCATCTCAGCTTCCGTACTTCCTTCCTCCTCCAAAACCCACCTTACCGTCTCTTCTTAATGTCGCCCCTAGTAACAATCCTTTAAACCATAGTTTTGATGTGGGTTGCAATGTTGGGTTTCTTGAGCCTCAAGCTTCCAGCTCTAGTCTTCTGCGAGGCTTCACCGATTTCAGCTCAAATGAGAGCAACCAGATAAGCCTTCCTAACTTATGCTCAGATCCACAAGTTCCAACGTCAGGTATATCTCTGGTAACTGATAACAGTTTCTCAGGTTTTCGGGGTTTTGATGAGGAAGGTCCTGGAAAACCGCTATTCCTAAATAGACCCAAAATTTTGAGACCCCTTGAATCATTACCTCCGTCGGGAGCGCAGCCAACTCTGTTTCAGAAGAGGGTGGCTTTTCGAAAGAAGCTAGCGAACAACGATACTGAGAGAGACGGTGGAAAGAGTGAAATCGGAGAGGGGTACGAGAAGAAGAGGAAGATGGGTAGTTGGGAAGAAATGGAAGACGCTAGCCTTGATGGGTCTGGGTTGAATTACGATTCCGACGAGTTCACTGAGAATACGACGAGGACGGAGGAGAACTGCAAGAATGGAGGAAGCAACTGGAACATGAACAGTGCGGTTACTGGTGGTGGTGGTGACGGTGGCGATAAGAAGGGGAAGAAGAAGGGAATGCCTGCGAAGAATTTGATGGCTGAACGACGTCGTAGGAAGAAGCTCAATGATAGACTGTATATGTTGAGGTCCGTTGTTCCAAAGATTAGCAAGATGGACAGGGCTTCAATCCTTGGGGATGCAATTGAGTACCTTAAGGAACTTCTGCAAAAGATCAGTGACATCCATAATGAATTGGAGTCAACACCTTCTGGCTCTTCACTAAGCACTCCTGCCCCCAGCTTTCATCCTCTGACACCTACTCCGCCTGCATTACCTGGCCGTATAAAAGATGAACTTTGCCCCAGCTCATTGCCAAGCCCTAATGGCCAACCTGCGAGGATTGAGGTTAGGATGCGCGAAGGAAAAGCTGTGAATATCCACATGTTTTGTGGTCGCAAGCCTGGTATCTTGCTTTCAACCATGAAGGCTATGGACAACCTTGGACTAGACATCCATCAAGCTGTTATCAGCTGTTTTAATGGATTTGCGTTGGATGTCTTTCGAGCTGAGCAATGGAAGGAAGGTCAGGAAGTTCTTCATCCGGAGCAAATCAAAGCAGTACTGTTGGAGTCAGCTGGCTACCATGGCGTGATCTAG 1620 0.4722 MISGVSGVAWMDENREGDDSTAPSSWANVNANIHIDKNQNQSHSGFVQNKDEMGSLCSYKPILEIDDDWYIAANNGIQNQPDIIRDITFSPNFADQDNLLLNPVDSSSSGSPSNTVFNNLDPSQLPYFLPPPKPTLPSLLNVAPSNNPLNHSFDVGCNVGFLEPQASSSSLLRGFTDFSSNESNQISLPNLCSDPQVPTSGISLVTDNSFSGFRGFDEEGPGKPLFLNRPKILRPLESLPPSGAQPTLFQKRVAFRKKLANNDTERDGGKSEIGEGYEKKRKMGSWEEMEDASLDGSGLNYDSDEFTENTTRTEENCKNGGSNWNMNSAVTGGGGDGGDKKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIEYLKELLQKISDIHNELESTPSGSSLSTPAPSFHPLTPTPPALPGRIKDELCPSSLPSPNGQPARIEVRMREGKAVNIHMFCGRKPGILLSTMKAMDNLGLDIHQAVISCFNGFALDVFRAEQWKEGQEVLHPEQIKAVLLESAGYHGVI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2317 539 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 218 535 - -
Alju06g2317 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 349 416 IPR036638 GO:0046983
Alju06g2317 539 SMART finulus 352 401 IPR011598 GO:0046983
Alju06g2317 539 MobiDBLite consensus disorder prediction 407 421 - -
Alju06g2317 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Alju06g2317 539 MobiDBLite consensus disorder prediction 313 330 - -
Alju06g2317 539 MobiDBLite consensus disorder prediction 407 452 - -
Alju06g2317 539 MobiDBLite consensus disorder prediction 260 347 - -
Alju06g2317 539 Pfam Helix-loop-helix DNA-binding domain 353 395 IPR011598 GO:0046983
Alju06g2317 539 CDD bHLH_AtAMS_like 349 419 - -
Alju06g2317 539 FunFam BHLH transcription factor 342 410 - -
Alju06g2317 539 MobiDBLite consensus disorder prediction 260 289 - -
Alju06g2317 539 Gene3D - 340 410 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2317 Alju-ChrAlju06 49645864 49650510 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2317 59 511 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 50.105 2.48e-116 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju06g2317 HLH 2e-09 No_clan