Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2313 ATGGCATCATCGGAGGTATCGATAAAGGGGAATGGTGTGAACGGGAAGGGGGAAGGTTTTGCTCCGGGTTACAACAACCATGAAGATGCTAGGAACGGTACAGAGGGTCAAAATGCTCATTCGTTAACCGGGAAAGAAGCGGAAGCTGCGCTTTACAGAGAGCTATGGCATGCCTGTGCTGGTCCTCTTGTTACAGTCCCTCGGGAAGGAGAGAGAGTTTTCTACTTCCCTCAAGGACACATAGAGCAGGTTGAGGCGTCTACTAATCAGGTGGCTGACCAGCATATGCCCGTGTACGATCTTCCTTCCAAAATCCTCTGTCGGGTGATCAACGTGTTGCTGAAGGCAGAGCCAGATACCGACGAGGTGTTTGCCCAGGTCACCTTGGTTCCTGAGACTAATCAAGACGAAAACGCCGTGGAGAAAGAACCTCCACCTCCTCCACCACCTCGATTTCACGTGCATTCGTTCTGTAAAACTCTGACTGCCTCTGATACAAGTACTCATGGTGGCTTTTCGGTTCTGAGACGACATGCTGATGAATGCCTGCCTCCTTTGGACATGTCTAAGCAGCCACCTACACAGGAGTTAGTGGCAAAGGATCTGCATGGCAATGAGTGGCGATTCAGACATATCTTTCGCGGTCAACCTCGCAGACACTTACTGCAGAGTGGTTGGAGTGTTTTTGTCAGCTCCAAGAGGCTTGTTGCTGGGGATGCCTTCATATTTCTTAGGGGCGAGAATGGGGAGCTGCGTGTTGGTGTCAGGCGGGCAATGAGACAGCAGGGTAATGTTCCATCCTCAGTGATTTCCTGTCATAGCATGCATCTTGGTGTCCTTGCAACGGCTTGGCATGCTATCTCGACTGGCACCATGTTCACTGTTTACTACAAGCCAAGGACGAGTCCGGCAGAGTTTATTATTCCATATGAACAATATATGGAGTCTCTCAAAAATAACTACACAATAGGGATGCGATTCAAAATGAGGTTTGAAGGTGAGGAGGCTCCAGAGCAAAGGTTTACTGGTACCATTGTTGGAATTGAAGATGCTGATCCCAACAGGTGGCCAAATTCCAAGTGGAGATACCTCAAGGTGAGATGGGATGAAACATCTAATATATCTCGCCCTGAAAGAGTCTCCCCTTGGAAAATAGAGCCTGCTGTTGCTCCTCCAGCTCTGAATCCTCTTCCGATGCCCAGGCCTAAAAGGCCTCGTACTAATGTGGTTCCATTATCCCCTGACTCCTCTGTTCTTACTCGAGAAGCCTCATCTAAAGTTAGTAAAGACCCTTCGCAGGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATACTCGACCTTGAGAGGCAATTTTGCAGAAAGCAACGAGTCTGTTACTGCAGACAAGTCTGTTATGTGGCCACCTGCAGTAGATGATGAAAAGATTGATATGGTTTCCACCTCAAGAAGGTATGGGTCAGAGAGTTGGATGTCAATGGGGAGGCATGAGCCAACCTACCCAGATCTATTATCAGGCTTTGGAGCCAGTGGAGATTCTTTTCGTTCACCCTTGGCTGATCAGAATGTCCCTCTGTCTAGTCCTGCTAAAAAGCATTCGTTGGACCAAGAAGGGAGGTTTACTGTGCTGGCTAATCCATGGCCTGCAGGGCCCTCTGGTCTATCACTACACCTCCCTGACTCAAATATCAAGGGTTCTGTGAATGGTGGTGATGTAACATATCAAACTCCAGGGAATGTGAGGTATGGTGCATTTGGGGACTACACTGTTCTCCATGGTCATAAAATCCAGCAATTACATGGGAATTCGTTGATGCCACCACCATCTACAACACAATATGAGAGTTCTCGTTCAAGAGAGTTGATGTCAAAACCATTATCTACACAAACAAGTGAGCCTGTCAAGCCAAAAGATGGGGATTATAAGCTCTTTGGCTTCTCACTTATCAGTGGCTCTGTTACGCCTGAACCACCTGTATCCCAAAGAAATGTGACTAGCGAGTCACCAGGTCACATGCATATTGCATCTTACAATTCTCATGAAATTGATCATAAATCAGAACAACTGAGGGGTTCAAAGCCATCTGATGTAGCTGCTGTTGATGATCCAGAGAAGTCATTGCAAGCTTCTCAGACACATCTGAAAGAGGTTCAAGCCAAACCACCAAGTGGTTCTGCTAGGAGCTGCACTAAAGTACACAAGAAAGGAATTGCACTTGGTAGGTCAGTGGACCTCACTAAGTTCAGCAACTATGAAGAATTAGTTGTTGAACTAGACCAGCTGTTTGAATTTGGTGGTGAATTGATGTCTCCCAGAAAGGATTGGCTTATTGTCTATACTGATGATGAGGGTGACATGATGCTTGTTGGGGATGATCCATGGCAGGAGTTCTGTGCCATGGTTCGCAAAATTTATATCTATCCCAAAGAGGAGATTCAAAAAATGAGCCCAGGTACACTAAGTTCAAGGAGTGAAGAGAATCAGTCAACTAGTGAAGCTTCCAGGGCTGGAAAAGTGGAATCTACTGAAAAGCAATCCAATTGGAAATAG 2553 0.4673 MASSEVSIKGNGVNGKGEGFAPGYNNHEDARNGTEGQNAHSLTGKEAEAALYRELWHACAGPLVTVPREGERVFYFPQGHIEQVEASTNQVADQHMPVYDLPSKILCRVINVLLKAEPDTDEVFAQVTLVPETNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISCHSMHLGVLATAWHAISTGTMFTVYYKPRTSPAEFIIPYEQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPNRWPNSKWRYLKVRWDETSNISRPERVSPWKIEPAVAPPALNPLPMPRPKRPRTNVVPLSPDSSVLTREASSKVSKDPSQASGFPRVLQGQEYSTLRGNFAESNESVTADKSVMWPPAVDDEKIDMVSTSRRYGSESWMSMGRHEPTYPDLLSGFGASGDSFRSPLADQNVPLSSPAKKHSLDQEGRFTVLANPWPAGPSGLSLHLPDSNIKGSVNGGDVTYQTPGNVRYGAFGDYTVLHGHKIQQLHGNSLMPPPSTTQYESSRSRELMSKPLSTQTSEPVKPKDGDYKLFGFSLISGSVTPEPPVSQRNVTSESPGHMHIASYNSHEIDHKSEQLRGSKPSDVAAVDDPEKSLQASQTHLKEVQAKPPSGSARSCTKVHKKGIALGRSVDLTKFSNYEELVVELDQLFEFGGELMSPRKDWLIVYTDDEGDMMLVGDDPWQEFCAMVRKIYIYPKEEIQKMSPGTLSSRSEENQSTSEASRAGKVESTEKQSNWK 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2313 850 MobiDBLite consensus disorder prediction 391 407 - -
Alju06g2313 850 ProSiteProfiles PB1 domain profile. 728 810 IPR000270 GO:0005515
Alju06g2313 850 MobiDBLite consensus disorder prediction 391 437 - -
Alju06g2313 850 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Alju06g2313 850 MobiDBLite consensus disorder prediction 653 673 - -
Alju06g2313 850 MobiDBLite consensus disorder prediction 410 437 - -
Alju06g2313 850 MobiDBLite consensus disorder prediction 654 673 - -
Alju06g2313 850 SUPERFAMILY DNA-binding pseudobarrel domain 153 286 IPR015300 -
Alju06g2313 850 CDD B3_DNA 155 257 IPR003340 GO:0003677
Alju06g2313 850 SMART B3_2 157 259 IPR003340 GO:0003677
Alju06g2313 850 MobiDBLite consensus disorder prediction 1 42 - -
Alju06g2313 850 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Alju06g2313 850 MobiDBLite consensus disorder prediction 817 850 - -
Alju06g2313 850 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 817 IPR044835 GO:0003677|GO:0006355|GO:0009725
Alju06g2313 850 Gene3D - 320 391 - -
Alju06g2313 850 FunFam Auxin response factor 724 817 - -
Alju06g2313 850 Gene3D - 154 259 IPR015300 -
Alju06g2313 850 FunFam Auxin response factor 155 259 - -
Alju06g2313 850 FunFam Auxin response factor 320 392 - -
Alju06g2313 850 Pfam AUX/IAA family 716 815 IPR033389 -
Alju06g2313 850 MobiDBLite consensus disorder prediction 603 635 - -
Alju06g2313 850 MobiDBLite consensus disorder prediction 600 638 - -
Alju06g2313 850 SUPERFAMILY CAD & PB1 domains 731 805 - -
Alju06g2313 850 Gene3D - 724 817 - -
Alju06g2313 850 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2313 Alju-ChrAlju06 49598207 49602802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2313 1 842 B3 DNA Binding Superfamily AT5G62000 64.815 0.0 1093
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Alju06g2313 AUX_IAA 2.3e-11 CL0072