Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2309 ATGCCCTTTGAAGTAATGGATCAGAGGGCTGTATCTGCCTCATCACACTTCTTTGATGACATTCCCTTTTGCTCCGAGAAGAATGCCGGATTGCAGAGGCCAAAATCTATTCATGACCACTACCATCAAGGAAAGAATAGAATGGCAGCATCAGCTGGCAGCATTTTGAATGCTTTGTCACCTCGGGAAGTTAGTGCAAAGACTAGCTGGTCAAAGTCACCAACAGGTCTGTCTGGTGAAGAAGGCAGTGTTGATATGTTTAAAGCCTCCAAGGAAGCATTAAATCATCATCCCAGATCTCAGTCTAATGCGCGTATGCAGCCAGCATCTAACCCATATGGTTTAATTGGCAATAAGATCATCACTAATGCTGCCTCACGTGAAAGTAGTTTATTCTCAAGCTCACTGTCTGAGATATTTACCCGGAAGATGAGGTTAATGGAAAATGATGTTCTGCCTCAACAGCCTTTTACTGTTGGTTCACTTCCTGAGGAGGAACCATTCAAATCTCTTGAAGAAATTGAGGCTGAAACTATTGGAAATCTCCTTCCTGATGAAGATGATCTATTTTCTGGTGTCATTGATGACTTAGGATTCAATACTCTTACCAAAACTGGTGATGACCTGGAAGATTTTGATCTGTTTAGCAGTGGTGGAGGCATGGAGCTGGAAGGTGATGAACATCTAACTTCAGGAAAAAGAACCAGCGGTCCAGATGGAGATCCTGGTTGCTTTGGAGGCTTCAAAGGGAAACTTCCTTTTGGTGAACACCCTTCTAGAACACTTTTTGTTAGAAACATCAACAGCAATGCCGAAGATTCTGAGCTGAAGGCTCTCTTTGAGCAATATGGTGATGTCCGAACCACCTATACTGCTTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGATATAAGATCTGCACAAAAAGCAATGAAAGCTCTTCAAAACAAGTCATTGAGGTCTAGGAAACTTGACATACATTATTCGATACCAAAGGTAAATGCTCCAGAGAAGGATATTAGCCATGGTACATTGCTTCTATCTGGTCTTGATTCTTCTGTTTCACATGATGAACTTCTACAAATTTTTGGATTTTATGGAGAAATCAAAGAAATTTACCAATCTCCTGAAACGAATTATGACAAATTTATGGAGTTTTATGATGTGCGAGCTGCTGAAGCTGCTCTTCGTGCTTTGAACAAGAGTGAAATTTCTGGGAAGCGGATCAAGCTTGAACCCAGCCATCCTAGGGGTTCAAGTGCAACAAGTTTGATGCAGCAGTCTCAGAAGGGGCAGAATGAGTCTGATCTTAGTCAGAGTATGTGTGACAACTTATCACTAAGCCAGAGTGCAATAACGTCTTCTGGAGTAATTGCATCTGGCTTCTTGGACAATGGATCTGATCATGGACTTCCAGCAGCAATACGACAAACTATGGATACCTTACCGATGAGTGTATTGCCACATGTGAATTCTGGCATTCACAACACGAGAGGGCGATCAATTCCTAGATTCCATCCTCATTCCCTCCCCGAGTATCACGATGGTTTAGCTTGTGGCAGTCCTTACAACTTTTCAAGAACCTTTAGCAGTGTATCTGGTAATATGGGTCCAGGAGTGACAGATAGCTCTGATAGCAGGCACTCTCTGGGATTCGGTTCACCCGGGAAATTGACGGACTTTAATGGAGGAGGAAATGGGAGCCTTCCTAATCATGGGCTTTATCACATGTGGAGCGGATCGAATTTGCCCCAGCAAACTCCACCAGGTCCAATGGTTTGGCAGAAAACACCATCATTTGTTAATGGTGCTTGTGCTCCTTGTGTTCAACAGATGCCTGGCTTTCCCAGATCACCATCTCATATGATGAGAGCATCACATATAGACCACCATGTCGGTTCAGCACCGGTCGTTACTGCCTCCCCATGGGACAGACGGCATTCTTATTTGGCAGAGTCCCCTGATTCCTCTGGTTTTCACATGGGTTCTCTTGGTAGTACAGGTTTTCCTGGTACATGGCAATTGCATCCTCCTGAATTTTCTTCTCACAAAATGTTTCCTCATGTTGGTGGGACTGGCTTGGATTTGTCAACCAATGCTGGGCAGAGCTCCCCAAATCAGTTATCACATGTTTTCCCTGGGAGATATCCCATGACCTCAATGTCTAAATTTGATTCTACCAGTGACAGAATGAGAAACTTCTATCACCGTAGAAGCGATGCTAACACTAACAGTGCTGACAAAAAGCAATTTGAACTTGACCTAAGTCGCATATTGAACGGAGAAGACACACGAACAACACTTATGATTAAGAATATTCCCAACAAGTATACTTCAAAAATGCTTCTTGCTGCCATAGATGAGCAATGTCGGGGAACTTATGACTTTTTGTATTTGCCAATTGACTTCAAGAACAAATGCAATGTTGGCTATGCTTTCATCAACATGACTGATCCTAGTCAGATTATTCCCTTCCACAAGGCTTTTAATGGGAAAAAATGGGAGAAGTTCAACAGTGAAAAGGTGGCTTCGCTTGCCTATGCTCGAATCCAGGGAAAAACTGCTCTTATTGCACATTTCCAAAATTCGAGCCTGATGAATGAAGATAAACGTTGCCGCCCTATTCTCTTTCATACTGAGGGCCCAAATGCCGGGGATCCGGAGCCTTTTCCCATGGGCTCAAATGTAAGATTGAGGCCTGGAAAATCACGTGCTAGGAGCCCATCGGCTTTGACTAATGGAGAGGAGTCTTCCAGTGGAATAAGTTCTTCAATGGGCTCTTCAAAAAACTCAGACTGA 2805 0.4321 MPFEVMDQRAVSASSHFFDDIPFCSEKNAGLQRPKSIHDHYHQGKNRMAASAGSILNALSPREVSAKTSWSKSPTGLSGEEGSVDMFKASKEALNHHPRSQSNARMQPASNPYGLIGNKIITNAASRESSLFSSSLSEIFTRKMRLMENDVLPQQPFTVGSLPEEEPFKSLEEIEAETIGNLLPDEDDLFSGVIDDLGFNTLTKTGDDLEDFDLFSSGGGMELEGDEHLTSGKRTSGPDGDPGCFGGFKGKLPFGEHPSRTLFVRNINSNAEDSELKALFEQYGDVRTTYTACKHRGFVMISYYDIRSAQKAMKALQNKSLRSRKLDIHYSIPKVNAPEKDISHGTLLLSGLDSSVSHDELLQIFGFYGEIKEIYQSPETNYDKFMEFYDVRAAEAALRALNKSEISGKRIKLEPSHPRGSSATSLMQQSQKGQNESDLSQSMCDNLSLSQSAITSSGVIASGFLDNGSDHGLPAAIRQTMDTLPMSVLPHVNSGIHNTRGRSIPRFHPHSLPEYHDGLACGSPYNFSRTFSSVSGNMGPGVTDSSDSRHSLGFGSPGKLTDFNGGGNGSLPNHGLYHMWSGSNLPQQTPPGPMVWQKTPSFVNGACAPCVQQMPGFPRSPSHMMRASHIDHHVGSAPVVTASPWDRRHSYLAESPDSSGFHMGSLGSTGFPGTWQLHPPEFSSHKMFPHVGGTGLDLSTNAGQSSPNQLSHVFPGRYPMTSMSKFDSTSDRMRNFYHRRSDANTNSADKKQFELDLSRILNGEDTRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMTDPSQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGSNVRLRPGKSRARSPSALTNGEESSSGISSSMGSSKNSD 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2309 934 Gene3D - 344 443 IPR012677 -
Alju06g2309 934 Pfam RNA recognition motif 2 767 863 IPR007201 -
Alju06g2309 934 MobiDBLite consensus disorder prediction 878 934 - -
Alju06g2309 934 FunFam Protein MEI2-like 1 345 440 - -
Alju06g2309 934 FunFam MEI2-like protein 5 isoform 2 249 344 - -
Alju06g2309 934 CDD RRM1_MEI2_like 259 334 IPR034453 -
Alju06g2309 934 SMART rrm1_1 261 329 IPR000504 GO:0003723
Alju06g2309 934 SMART rrm1_1 346 414 IPR000504 GO:0003723
Alju06g2309 934 SMART rrm1_1 769 845 IPR000504 GO:0003723
Alju06g2309 934 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 260 333 IPR000504 GO:0003723
Alju06g2309 934 MobiDBLite consensus disorder prediction 418 442 - -
Alju06g2309 934 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 262 326 IPR000504 GO:0003723
Alju06g2309 934 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 412 IPR000504 GO:0003723
Alju06g2309 934 Gene3D - 249 343 IPR012677 -
Alju06g2309 934 MobiDBLite consensus disorder prediction 908 934 - -
Alju06g2309 934 CDD RRM3_MEI2_like 770 855 IPR034454 -
Alju06g2309 934 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 345 418 IPR000504 GO:0003723
Alju06g2309 934 PANTHER RNA RECOGNITION MOTIF-CONTAINING 100 911 - -
Alju06g2309 934 MobiDBLite consensus disorder prediction 409 442 - -
Alju06g2309 934 SUPERFAMILY RNA-binding domain, RBD 769 853 IPR035979 GO:0003676
Alju06g2309 934 SUPERFAMILY RNA-binding domain, RBD 257 418 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2309 Alju-ChrAlju06 49508335 49514106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2309 255 431 Eukaryotic Initiation Factors Gene Family AT3G16380 24.242 8.50e-08 53.9