Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2302 ATGTCGGCCATGGTTTCTGCTCTTGCTCAGGTCATTGGAGCTTCACCTAATGTTTATGATCATCACAACCCTTCGACTGATCGTATGTCTCACTCAACTTCTGAACCTAACGCTCAACCTTCTCTTCAACCACTTCAACATCATCATCAAGGGAGCACAAGGAAGAGACACTACAGAGGAGTAAGGCAAAGGCCATGGGGGAAATGGGCGGCTGAGATTCGTGATCCGAAGAAAGCTGCCAGAGTTTGGCTCGGAACCTTCGACACAGCGGAGGCGGCCGCCGTTGCCTACGATGAAGCCGCTCTCAGATTCAAAGGAAGCAAAGCTAAGCTCAACTTCCCTGAAAGAGCTCAACTTCAACCACCTCCTACCATGACAACGACGACGTCGTTTCCTTCCTCTTCTTCTTCTTCTTCAGGTGAATTTTCTTTCATCACAAATCCTCCTCCTCCTCCTCATCATCAACAACCACCACGTGTTCTTGCTCCTCCCACAGCAACCTTGGCTTCACAACAACCTTATTATTATCATAATTACCAATATTATCAACATCAACAACATGTTCCGCCAAGTGGTGGTTGGAGTCACGGTTTGTTTTATTCTCCTCATCAACAACAACAACCTTATACGGCTTCCTCGTCTTCCTCGTCTGGAATGTCCCACGACCAACATGAACAAGAACAACTTCTACAGTTTTCCATGCAATTTGGAGGGTCCTCCTCTTCTACTTCTCATCCACCTTCCAATTGGCCATATCATGATTTTGATGCTAAACCTTGA 780 0.4654 MSAMVSALAQVIGASPNVYDHHNPSTDRMSHSTSEPNAQPSLQPLQHHHQGSTRKRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAAVAYDEAALRFKGSKAKLNFPERAQLQPPPTMTTTTSFPSSSSSSSGEFSFITNPPPPPHHQQPPRVLAPPTATLASQQPYYYHNYQYYQHQQHVPPSGGWSHGLFYSPHQQQQPYTASSSSSSGMSHDQHEQEQLLQFSMQFGGSSSSTSHPPSNWPYHDFDAKP 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2302 259 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
Alju06g2302 259 MobiDBLite consensus disorder prediction 49 63 - -
Alju06g2302 259 Gene3D AP2/ERF domain 56 116 IPR036955 GO:0003700|GO:0006355
Alju06g2302 259 MobiDBLite consensus disorder prediction 145 159 - -
Alju06g2302 259 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Alju06g2302 259 MobiDBLite consensus disorder prediction 119 144 - -
Alju06g2302 259 Pfam AP2 domain 57 106 IPR001471 GO:0003700|GO:0006355
Alju06g2302 259 MobiDBLite consensus disorder prediction 19 48 - -
Alju06g2302 259 MobiDBLite consensus disorder prediction 16 63 - -
Alju06g2302 259 FunFam Ethylene-responsive transcription factor 2 56 115 - -
Alju06g2302 259 SUPERFAMILY DNA-binding domain 57 115 IPR016177 GO:0003677
Alju06g2302 259 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Alju06g2302 259 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Alju06g2302 259 PANTHER DNA-BINDING DOMAIN 36 224 IPR044808 GO:0003700|GO:0009873
Alju06g2302 259 MobiDBLite consensus disorder prediction 117 161 - -
Alju06g2302 259 MobiDBLite consensus disorder prediction 205 259 - -
Alju06g2302 259 MobiDBLite consensus disorder prediction 205 249 - -
Alju06g2302 259 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2302 Alju-ChrAlju06 49409667 49411564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2302 1 132 AP2-EREBP Transcription Factor Family AT5G61890 59.712 8.98e-47 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju06g2302 AP2 6.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2302 06 49409667 49411564 Alju06g2302 06 49409667 49411564 ECH
Alju06g2302 06 49409667 49411564 Alju01g0805 01 5985393 5987381 ECH