Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2263 ATGATAACTCAAAATTGTAGCCGCTCGTCTATGTCACCAACTCGGTCAAACTCAGAAGAAGAAAAGAAAAGTGGTCCCGAGTCAATTGCCCCTCTTCCTCCCTCCCCTCCCCTTCCCTTCCTTCCCTTCCCACATACACCCATTTATTTATATTCCCTCCCTTCCTCCTCTCATTCACTTTCCCTCAGTCTCTCCCCCAACCCACCAAAACCAAACACCGCCATGGGCCGATCTCCTTGCTGCGAGAAACAACACACTAACAAAGGTGCTTGGACCAAAGAAGAAGACCAACGCCTCATTACTTACATCTCCCTCCACGGCCAAGGCTCCTGGCGTTCCCTCCCCAAAGCCGCCGGTTTGCTGAGATGTGGGAAAAGTTGCAGACTTAGATGGATTAACTATCTGAGGCCTGATCTTAAGAGAGGCAATTTCACTCAGGAGGAAGATGACCTTATTATTAACCTTCACAGCTTACTCGGCAACAAGTGGTCTTTAATCGCGGCTAGATTACCGGGTCGAACCGATAATGAGATCAAGAACTACTGGAACACCCACATCAAGCGCAAACTCTACAGCCTCGGAATCGACCCTCAAACCCACCGTCCACTCACCTCCGCCGTCTCAGCAACCACCACCACCCCGGCGACCACCAGCGGTACTATCAAGAGAAGAACCAGTAACAACCAAAATAATAACCCTAAACTCAAGCCAGTCTCATCATCAGGGGAAGATTCAAATAGCAATAGCAGCAGCGGGATTACCACAGACGGATCAGCCAATTCTGATAATAATAATCATAATCGTAATCATCACGAACTCATCAACCTGGAGCTCTCCATAGGTCTTCCTGCTTCCTCCAACGACAATAAAACCCTCGTCGTTTACCCCTCTGAAGCAGTCTCAGACGACAAGTTATTAAAACGACAACGACGTGATGATGATAAAGAAGTGTGTTTGTGTTGCAGTTTAGGGTTTCAGAGCGTCGTTGGTGGTGGTGGTAATAATCAAGCATGTAGGTGCAAGGCCATGCTGAGAAATACTTGTTCAGTTATTACTACTGCACCTACTTCTGCTGCTGCTGCTTCAGACATTAACGTTTACAGATTTTTCACTCCCTTAGATTCTTAG 1128 0.4734 MITQNCSRSSMSPTRSNSEEEKKSGPESIAPLPPSPPLPFLPFPHTPIYLYSLPSSSHSLSLSLSPNPPKPNTAMGRSPCCEKQHTNKGAWTKEEDQRLITYISLHGQGSWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTQEEDDLIINLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRKLYSLGIDPQTHRPLTSAVSATTTTPATTSGTIKRRTSNNQNNNPKLKPVSSSGEDSNSNSSSGITTDGSANSDNNNHNRNHHELINLELSIGLPASSNDNKTLVVYPSEAVSDDKLLKRQRRDDDKEVCLCCSLGFQSVVGGGGNNQACRCKAMLRNTCSVITTAPTSAAAASDINVYRFFTPLDS 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2263 375 Gene3D - 143 190 - -
Alju06g2263 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 136 190 IPR017930 -
Alju06g2263 375 FunFam Myb transcription factor 142 211 - -
Alju06g2263 375 ProSiteProfiles Myb-like domain profile. 83 135 IPR001005 -
Alju06g2263 375 MobiDBLite consensus disorder prediction 60 88 - -
Alju06g2263 375 FunFam MYB-related transcription factor 87 140 - -
Alju06g2263 375 CDD SANT 90 135 IPR001005 -
Alju06g2263 375 SMART sant 140 188 IPR001005 -
Alju06g2263 375 SMART sant 87 137 IPR001005 -
Alju06g2263 375 SUPERFAMILY Homeodomain-like 86 182 IPR009057 -
Alju06g2263 375 MobiDBLite consensus disorder prediction 202 268 - -
Alju06g2263 375 CDD SANT 143 186 IPR001005 -
Alju06g2263 375 Gene3D - 88 140 - -
Alju06g2263 375 ProSiteProfiles Myb-like domain profile. 136 186 IPR001005 -
Alju06g2263 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 135 IPR017930 -
Alju06g2263 375 MobiDBLite consensus disorder prediction 202 264 - -
Alju06g2263 375 Pfam Myb-like DNA-binding domain 141 185 IPR001005 -
Alju06g2263 375 Pfam Myb-like DNA-binding domain 88 135 IPR001005 -
Alju06g2263 375 MobiDBLite consensus disorder prediction 1 36 - -
Alju06g2263 375 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 75 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2263 Alju-ChrAlju06 48998750 49000222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2263 75 286 MYB Transcription Factor Family AT4G09460 61.086 1.03e-85 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju06g2263 Myb_DNA-binding 3.4e-14 CL0123