Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2174 ATGGCTGGCAAAAGTGGGAAGAAACCAGTAAGCCTCAACGATAGCCATTATCGGTTCCTCCAAGACCTTTCCGCTCCTCCGAAACCCTACTCAAAGCTATCTGATGGCGAGGACGACTCGTCCTCGACAATACTCAAAGGCCCAAGGCAGCAGCAGGGAAAAACTTTATTTAGGGATAAGGAAGATGATAGCATCCCTCGATTTTCTGCGATTACCGACTTTGATTCTCCTATTGAGCTACGCTCAGCGGAAGACAAACAGCCCGTCAAGGTAGATGATGGTCGACGTGGTCTCTGTACAGTCTCGACGAAGGAAAATATTAAATATCCAGGTGACAATATTCCCCAGTCTAACGAAGCAACCGACTCTGATACCCACAAAGTGGAAAAGAAGACTAAGGTCAAAATGGAAGGCCGGCGTCGCCTATACAAGGTTTCCTACGCAGACAATGATAATACTGATAAAATGGTGGCGCTAGATGTCTCGGAGGTTTCTGACCTCGTGGATTTTGATTCACCCCCTTTGCCGACGAAAAATGCGATTGGGATTGAGAAGAGTCAGGGTAGGAGTGAAATTAGGGACATATTAGATGAGTTGAGCTCGAAGTTTGATGTTATGTCAATTGAGAAGAAGCGGGTAGTGAAATCAGCGCATACATTTGAAAATTGTTCAGCATTGGTTGTAGGAAATGAAACTACGGAAGATAAGAATATTGATTATGCCAGTGCAGATTCTTCATTTTCAGCTCAACAGGACCCATGCGACAGTTCATCTGATGCATCTAAGGGTGCTACTGGAGGCATTGAACATGTAGAAGATGATTCGGACGATTCTGTTGAAGTGCTCGATCATTTTGACTCTGAGAATGATAATTCTATAACTTTGAATGGTCCACATTCCACATACAAGTTGCCAGGCAAAATTGCAAAAATGTTGTATCCACATCAGCGTGATGGTTTGAAGTGGCTCTGGTGTCTGCATTGTCAGGGTAAGGGTGGAATCCTGGGGGATGACATGGGTCTAGGGAAAACTATGCAGATTTGTAGTTTTCTAGCTGGTTTATTCGATTCACGTTTGATTAGAAGGGCATTGGTGGTGGCACCAAAAACCCTACTTCCACATTGGATCAAAGAACTATCTGTTGTTGGTCTTTCTGAGAAGACAAGGGAATACTTTGGAACTTGTACAAAACTCCGAGATTATGAACTTCAATACATACTCCAGGATAAAGGTGTTCTTCTTACAACATATGATATTGTTCGCAATAATTCTAAATCATTACGGGGGAATTATGTATCTGATGATGAGGAAAGTGAAGACGGCCCCATATGGGATTATATGATCCTTGATGAGGGCCATCTTATAAAGAATCCAAGCACACAAAGAGCTAAAAGTTTGCTAGAGATACCAAGTGCCCATCGGATAATCATCAGTGGCACACCATTGCAAAATAATCTAAAGGAGTTGTGGGCCTTGTTCAATTTCTGCTGCCCTGAGTTGCTGGGTGATAAGAAATGGTTTAAAGAAAATTACGAGTCAGCTATACTTCGTGGAAATGACAAAAAAGCTTCTGAGAGAGAGAAGCGTGTTAGTTCTTCTGTTGCGAAGATGCTTAGAGATCGTATTCAGCCTTACTTTTTAAGACGCCTAAAGAGTGAGGTTTTTAGTCAAGATGACAAGAATTCAACAACAAAACTCTCTCAGAAACGGGAGATTATTGTGTGGCTACGATTGACTAGTATTCAGAGATATCTTTATGAAGCATTTCTAAAGAGTGAGATTGTTCTTTCAGCATTTGATGGCTCACCGCTTGCTGCACTTACGATTTTGAAGAAAATTTGTGATCATCCGCTTTTGTTGACTAAGCGGGCAGCTGAAGATGTGTTGGAAGGGATGGACTCAATGTTAAAGCCAGAAGAGGTTAACGTTGCGGAGAAATTGGCAATGCACTTAGCTGATGTTGCTGACGCGGACAAGTTCAAGGCTGAGCATGATGTATCGTGCAAAATGTCTTTCATAATGTCATTATTGGATAATTTGATCCCACAAGGACATCATGTGCTTATTTTTTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGAATCTATAACGTCCAAAGGTTATGAATTTGTACGAATTGATGGAACAACAAAAGCTAGTGATAGAATAAAGACTGTTAATGATTTCCAAGATGGTTCTGCGGCTCCCATATTTCTTTTGACATCTCAAGTTGGCGGTTTGGGGCTGACACTTACTAAGGCAGATCGTGTGATTGTAGTTGATCCTGCTTGGAACCCAAGTACGGATAACCAAAGTGTTGACCGTGCATATCGTATTGGCCAAAAGAAAGATGTTCTTGTATATAGACTAATGACAAGCGGAACGGTTGAAGAAAAGATATACAGGAAGCAGGTATACAAGGGGGGTTTGTTTAAAACAGCAACCGAGCATAAAGAACAAATTCGGTACTTCAGCCAGCAGGATCTCAGAGAGCTTTTCAGCCTCCCCAAGGAGGGTTTTGATGTGTCTGTTACTCAGAAGCAATTAGAGGAGGAGCACGCTTGCGAAGATTCAGTGGATGACTATTTTAAAGCGCACATAGAGTTCTTGAAAAGTCAAGGCATAGCCGGAGTTAGTCACCACAGTTTACTCTTCTCCAAAACAGCACCAGTTCAAGATGCACCTGAGAATGAAGTGTCAAGGAATCATGGGACCAGATATTTTGGAACTTCAGCATCTTCTTCCCTTGAACGTCCTGTTGATGGAGCTGAGTTTGCTTTTAATCCAAAGGAAGTCAAAGTGAGCAAAAAAGGTTCTTGCCCCAATAGTGCTGGTAAATTGACTGAGTCTGAAATCAAAGATAAAATCAAACGGATTTCTCAAACACTTGCAAATAAGGCGATGATTTCTAGATTACCTGATGGAGGAGAAAAACTACAGCAGCGGCTTGTTCAACTAAAATCAGAGCTCTGCAAATTGAAGATGGAAGAAGGAAATGTGTTTGATTTGGATGATATAAGTGGAAAATTTCAAAAGGTATTAAATGTGTAG 3054 0.4155 MAGKSGKKPVSLNDSHYRFLQDLSAPPKPYSKLSDGEDDSSSTILKGPRQQQGKTLFRDKEDDSIPRFSAITDFDSPIELRSAEDKQPVKVDDGRRGLCTVSTKENIKYPGDNIPQSNEATDSDTHKVEKKTKVKMEGRRRLYKVSYADNDNTDKMVALDVSEVSDLVDFDSPPLPTKNAIGIEKSQGRSEIRDILDELSSKFDVMSIEKKRVVKSAHTFENCSALVVGNETTEDKNIDYASADSSFSAQQDPCDSSSDASKGATGGIEHVEDDSDDSVEVLDHFDSENDNSITLNGPHSTYKLPGKIAKMLYPHQRDGLKWLWCLHCQGKGGILGDDMGLGKTMQICSFLAGLFDSRLIRRALVVAPKTLLPHWIKELSVVGLSEKTREYFGTCTKLRDYELQYILQDKGVLLTTYDIVRNNSKSLRGNYVSDDEESEDGPIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIIISGTPLQNNLKELWALFNFCCPELLGDKKWFKENYESAILRGNDKKASEREKRVSSSVAKMLRDRIQPYFLRRLKSEVFSQDDKNSTTKLSQKREIIVWLRLTSIQRYLYEAFLKSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHLADVADADKFKAEHDVSCKMSFIMSLLDNLIPQGHHVLIFSQTRKMLNLIQESITSKGYEFVRIDGTTKASDRIKTVNDFQDGSAAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVLVYRLMTSGTVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQKQLEEEHACEDSVDDYFKAHIEFLKSQGIAGVSHHSLLFSKTAPVQDAPENEVSRNHGTRYFGTSASSSLERPVDGAEFAFNPKEVKVSKKGSCPNSAGKLTESEIKDKIKRISQTLANKAMISRLPDGGEKLQQRLVQLKSELCKLKMEEGNVFDLDDISGKFQKVLNV 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2174 1017 CDD SF2_C_SNF 661 792 - -
Alju06g2174 1017 SMART helicmild6 698 781 IPR001650 -
Alju06g2174 1017 Pfam SNF2-related domain 327 619 IPR000330 GO:0005524|GO:0140658
Alju06g2174 1017 FunFam Protein CHROMATIN REMODELING 24 291 569 - -
Alju06g2174 1017 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 672 831 IPR001650 -
Alju06g2174 1017 MobiDBLite consensus disorder prediction 102 133 - -
Alju06g2174 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 301 549 IPR027417 -
Alju06g2174 1017 SMART ultradead3 307 507 IPR014001 -
Alju06g2174 1017 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 564 841 IPR027417 -
Alju06g2174 1017 MobiDBLite consensus disorder prediction 244 263 - -
Alju06g2174 1017 PANTHER SNF2/RAD54 FAMILY MEMBER 136 993 - -
Alju06g2174 1017 Gene3D - 289 570 IPR038718 -
Alju06g2174 1017 Pfam Helicase conserved C-terminal domain 670 781 IPR001650 -
Alju06g2174 1017 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 499 IPR014001 -
Alju06g2174 1017 MobiDBLite consensus disorder prediction 895 914 - -
Alju06g2174 1017 MobiDBLite consensus disorder prediction 244 273 - -
Alju06g2174 1017 MobiDBLite consensus disorder prediction 106 121 - -
Alju06g2174 1017 MobiDBLite consensus disorder prediction 1 62 - -
Alju06g2174 1017 MobiDBLite consensus disorder prediction 36 50 - -
Alju06g2174 1017 Gene3D - 571 869 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2174 Alju-ChrAlju06 47908599 47918594 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2174 312 835 RAD5 or RAD16-like Gene Family AT1G02670 24.658 2.10e-38 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju06g2174 SNF2_N 1.6e-46 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2174 06 47908599 47918594 Alju06g2174 06 47908599 47918594 ECH