Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2173 ATGGCGGATAAAGATGGCACCAAACCATTGAGCTCCAACCCCAGCCCTCATCGAATCCTCCAAGACCTTTTCGCTCCTAATAATAAGCTCTCAACAAACTCGTCTGATGATGAAGATGATAAGTTACCAAGGTGGCGAGAAGATGTTGAAGCTTCATCAAACGACAGAAAAAGTGAAGAAGATGGTATACTCGATAAGTCAGAAGTTTTTGACCCCGTGGGTTTTGACTATGCTGGCGCAGATTATTCAACTGTACTTCAACAGGACCCCTGTGATGGTTCATCCGGTGCAACTGAGATTGTTGGTGGTGGCATTGAAGAATCCGTGGAAAATAAATCAGTAGATTCTGTTCAATTGGATCATTTTGCTTCTAAGAGTGATAATTCTGTAACATTGGATGGCCCAAATTGTACATTCAAGTTGCAAGCTGAAATTGCAGCAATGTTGCTAGAACATCAGCGGGATGGCTTGAAGTGGCTCTGGTCTTTGCATTGTCAGGGAAAAGGTGGAATCTTGGGAGATGACATGGGTTTGGGAAAAACAAGGCAGATATGTAGTTTTCTAGCTGGTTTGTTCAATTCACGTTTGATTAAAAGGGCATTGGTGGTGGCGCCAAAAACCTTACTTTCCCATTGGGTCAAAGAACTATCTGTTGTTGGTCTTTCTGAGAAGACAAGAGTATATCAGGGAACTTTTATAAAAGCCCCAAGAGGAAGGACTTTACTGCATACATCTGAAGGTGTTATTGTCACAACATATGGCATGGTTCGTGACTATTCTAAGTCATTAATAAGTGAGCTCAGACACTTGCGATCTTATGATGAGAAAACCAGAGACAGCCCCAAATGGCCGGATTATGTGATACTCGATGAGGGCCATCAAATAAAGAATCCAAATGCCCAGAGAGCTCAAACTTTGCAAGAGATACCATGTCCCCATCGCTTAGCCCTAAGTGGCACACCATGGCAAAATAATCTTAAGGAGATGTGGGCGTTGTTCAATTTCTGCAATCCTGGGTTGCTCGGTGATTATAAATGGTTTAAAGAAAATTTTGAGAGGCACATAAGTTATGGACGTGACAAAAGAGCTACTAAGGAATACAAGCGGTTGAGTTCCTCTGTGGCAAAGGAGCTCAGAGATCTTACTCAACCTTACTTTTTACGTCGTACAAAGAGCGAGGTTGTTGGGGCTAAAATTTCCAACAAACATGAGATTGTTGTGTGGCTACGACTGACCAATATTCAGCGACATCTTTACAAAGATTTTCTGAGGACGGTTAACGATAAAACATGGAATGATGGAGAAACATATGCTGCACTTGAGATTATGTGGAAAATATGTAATCATCCTCTTCTGTTGAGTAAACAAGACCTTTCAAAAGGAAAATCCAAGAAGCTGCTACATAGAGAAGAGGCTGATCTTGTAGATAAGTTGGAATTGCACATGAAAGATGTTATTAGGAACACATACAAATTCAAAGTTGAGCATGAAATCTCGTGCAAAATATCTTTCATAATGTCATTATTGGGTAATTTGATTCCACAGGACCATCATGTACTTATTTTTTCTAGAAGTCTCAAGATGCTTAATCTAATTCAGGAATCCCTGTTGTCCAAAGGTTATAAATTCTTACGAATTGATGGAACAACAAAAGCCCAGGACAGAACAAAGATTGTTGATGATTTCCAACAACATGCTGTAGCTCCCATTTTTCTTTTGTCATCCAAAGTTGGCGGTTTAGGGCTGACGCTAACTAGAGCAGATCGTGTGATTGTGACTGACCCTGATTGGAACCCAAGTACGGATGACCAGATTGTTGATCGTGCATGTCGTATTGGTCAAGAGAAAGTTGTTGTTGCATATAGACTAAATACATGTGGAACACTCGAAGAGAAAGCATACAGGAAGCAAGTATTCAAGGACGGATTGTGTAAGATGGGGACTGAACATAAAGAAAAAGCTCGTCACTTCAGCCACAATGATCATAGATATCCTTTCACTCCCCCCAAAAAAGGCTTTGATGTATCTGAGACCCTGCAGCAATTAGAGAAGAAGTATGATTGGGAAGAGACAATGGATGATTCTTTTAAAGAACATATAGATTTCTTGAGAAGTCTAGGCATAGCTGGAGTTAGTCACCACAATGTACTTATCTCCTTAGAAGCATCAGATGATGAAGATGACCCTGAAAATTATGAAGCAACAAGAGCTGATGAGTCTGCTTTTTATTCAAAGAGAGCCAGATGGAGAAGTAAGAGTTCTTCCCCAAATAGTTTGGGTAAATTATCTGAACTATTCGCCCGGAAGGAAAATCATGAAATGATGGGCACGGGGTTTAGAAAATTGGACTGGAATTCCAATGAATGGAAACACAGGCATCAAAGGCAAAAGATAATTCAAGCTAATTGGGCCGAATTGAGAAAAATGATGGCACAAGAATCCAAATATAAATACCGTTCGCAATTGGATGAGGAAGTGGGCCCACATGGTGTTGCAATTTCATCGCCAATAACAAGTAGCCAAATTAAGCATACGCAGTGCCCACCGCAGAAGAGCAATGAAAGCATCACCGCTCGTCTTATCAATAGAGCTCAAAGGCTTTTCAAGATACTGAGTAGGACATTTTTGGACTTTCAGCTTCCTTCCGGCGACGCGCCCAGCCATCATATCATCCCTACTCTATTTTCTGCGATCACAGGCATTCGTGTGAGAATCCCATTTTTCAATGTCCATCTCAAATTCAAATATTGCAGTCTAAGCGGGAAGCTGAGGACCGTTGATTGTTCCTAG 2790 0.4104 MADKDGTKPLSSNPSPHRILQDLFAPNNKLSTNSSDDEDDKLPRWREDVEASSNDRKSEEDGILDKSEVFDPVGFDYAGADYSTVLQQDPCDGSSGATEIVGGGIEESVENKSVDSVQLDHFASKSDNSVTLDGPNCTFKLQAEIAAMLLEHQRDGLKWLWSLHCQGKGGILGDDMGLGKTRQICSFLAGLFNSRLIKRALVVAPKTLLSHWVKELSVVGLSEKTRVYQGTFIKAPRGRTLLHTSEGVIVTTYGMVRDYSKSLISELRHLRSYDEKTRDSPKWPDYVILDEGHQIKNPNAQRAQTLQEIPCPHRLALSGTPWQNNLKEMWALFNFCNPGLLGDYKWFKENFERHISYGRDKRATKEYKRLSSSVAKELRDLTQPYFLRRTKSEVVGAKISNKHEIVVWLRLTNIQRHLYKDFLRTVNDKTWNDGETYAALEIMWKICNHPLLLSKQDLSKGKSKKLLHREEADLVDKLELHMKDVIRNTYKFKVEHEISCKISFIMSLLGNLIPQDHHVLIFSRSLKMLNLIQESLLSKGYKFLRIDGTTKAQDRTKIVDDFQQHAVAPIFLLSSKVGGLGLTLTRADRVIVTDPDWNPSTDDQIVDRACRIGQEKVVVAYRLNTCGTLEEKAYRKQVFKDGLCKMGTEHKEKARHFSHNDHRYPFTPPKKGFDVSETLQQLEKKYDWEETMDDSFKEHIDFLRSLGIAGVSHHNVLISLEASDDEDDPENYEATRADESAFYSKRARWRSKSSSPNSLGKLSELFARKENHEMMGTGFRKLDWNSNEWKHRHQRQKIIQANWAELRKMMAQESKYKYRSQLDEEVGPHGVAISSPITSSQIKHTQCPPQKSNESITARLINRAQRLFKILSRTFLDFQLPSGDAPSHHIIPTLFSAITGIRVRIPFFNVHLKFKYCSLSGKLRTVDCS 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2173 929 SMART ultradead3 145 347 IPR014001 -
Alju06g2173 929 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 504 654 IPR001650 -
Alju06g2173 929 SMART helicmild6 530 613 IPR001650 -
Alju06g2173 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 389 IPR027417 -
Alju06g2173 929 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 339 IPR014001 -
Alju06g2173 929 Pfam SNF2-related domain 152 451 IPR000330 GO:0005524|GO:0140658
Alju06g2173 929 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 656 IPR027417 -
Alju06g2173 929 Gene3D - 401 699 IPR027417 -
Alju06g2173 929 MobiDBLite consensus disorder prediction 33 65 - -
Alju06g2173 929 Pfam Helicase conserved C-terminal domain 501 613 IPR001650 -
Alju06g2173 929 MobiDBLite consensus disorder prediction 1 65 - -
Alju06g2173 929 CDD SF2_C_SNF 493 623 - -
Alju06g2173 929 Gene3D - 118 388 IPR038718 -
Alju06g2173 929 PANTHER SNF2/RAD54 FAMILY MEMBER 31 859 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2173 Alju-ChrAlju06 47889644 47908515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2173 149 654 RAD5 or RAD16-like Gene Family AT1G02670 25.229 4.65e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Alju06g2173 SNF2_N 1.1e-47 CL0023