Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2168 ATGGCAAAGAGTTCCAGCCATGTTCAGTCAAAAAAAGACATGGTCGCTATTAAGAAATCCAATTTGAAGCCAAGATCTTCATCCACTCTTCTAAAGGTAAAGAGAGGCAGAGTACAAAAGAAGGTTACAAGTAAGAATGTAGAAAGAGCTTTGAGGCTAAATAGGTCAACCGTTGATTATGAGTCTCATGCTTTTGAGCGAGCGAAAGAGGTTCAAGCAAATCTATCTCATGAATTTCCAAGCCTTATCAAGTACATGCTCCCATCACATGTTTCTGGTGGATTTTGGCTGGGTCTTCCTAAACAATTCTGTGAAATGCATTTGCCCAAGGTTGAAACTATGATTGTTTTGGAAGATGATAATGGAAGAGAATATGAAACAAAATATCTTACCGAGAAGGTGGGCTTAAGTGGTGGATGGAGAGGCTTTTCAATTGCTCACGATTTACTTGAGGGGGATGTTTTAGTTTTCCATTTAATCAAGCCTCGCAAGTTCAAGGTGTACATCATAAGATCTCATGGGTCAAACGAAGTGGATGTTGCGCTCGGCCTTCTATATTTAGATGGTTGCATGAAGCAACAGCGTTCTAATGTTCCTCAAGAAAACGATCCAAGCAAGAGAACAATGATATGTGATGCTGACCTACTGCCATTAGATCAACATGAAAATACTAGTGATCTAGATGAAAATTTTGGCTCTGAAGTTTTGAATGGGATTAGATTATCAGAATCTTCTATCACTTTCGAAGAAGTCACTAGTATTGAGAATTTCTGCATTGTGGTTAATGGTCTGGTACTTGACTCAGAACTATCCAAACACCTCAAGACCAAGTACTATGAGCTTTGTTGTAGTCAAGGGATGTTTCTCCATGAGCACCTTCTTGAAGGTCAGAATTGTAAACTTGTCGTTGGAATGATCTGTGAGACCATTAATATTGCTGATGCCATTAGAGCCAGCAAGATCACAACCTCTTTGGATGGTTTTGAAGTATGGTATAAATCTTTAAAAGGCCTTGAAATCTTCGGCATGAATGTTAGTTTCTTGCTTGCTAGGCTAGAACAACTCATGAGTTTAGCTTCAAAATCCAAGAGGTACACGGATACAAGAATTAAACGAGACAAAGCTAAAGAGGAAAAGGAAGTTCTTGAACTAAAGCTTGAGGAAGTGAAAGAGACCATTAGTAGACTTGATGTTGAGCTTGACACCCAAAATTTGAACCCTGAGAGGTTGGAGGCCGAGTTTGAATATCTGGCTAATACTCCTTGGTGA 1269 0.3932 MAKSSSHVQSKKDMVAIKKSNLKPRSSSTLLKVKRGRVQKKVTSKNVERALRLNRSTVDYESHAFERAKEVQANLSHEFPSLIKYMLPSHVSGGFWLGLPKQFCEMHLPKVETMIVLEDDNGREYETKYLTEKVGLSGGWRGFSIAHDLLEGDVLVFHLIKPRKFKVYIIRSHGSNEVDVALGLLYLDGCMKQQRSNVPQENDPSKRTMICDADLLPLDQHENTSDLDENFGSEVLNGIRLSESSITFEEVTSIENFCIVVNGLVLDSELSKHLKTKYYELCCSQGMFLHEHLLEGQNCKLVVGMICETINIADAIRASKITTSLDGFEVWYKSLKGLEIFGMNVSFLLARLEQLMSLASKSKRYTDTRIKRDKAKEEKEVLELKLEEVKETISRLDVELDTQNLNPERLEAEFEYLANTPW 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2168 422 ProSiteProfiles B3 DNA-binding domain profile. 82 173 IPR003340 GO:0003677
Alju06g2168 422 MobiDBLite consensus disorder prediction 1 26 - -
Alju06g2168 422 Coils Coil 365 406 - -
Alju06g2168 422 SUPERFAMILY DNA-binding pseudobarrel domain 77 175 IPR015300 -
Alju06g2168 422 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 11 174 IPR044837 -
Alju06g2168 422 SMART B3_2 82 173 IPR003340 GO:0003677
Alju06g2168 422 CDD B3_DNA 80 171 IPR003340 GO:0003677
Alju06g2168 422 Gene3D - 57 173 IPR015300 -
Alju06g2168 422 Pfam B3 DNA binding domain 83 171 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2168 Alju-ChrAlju06 47824721 47829746 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2168 53 171 B3 DNA Binding Superfamily AT3G19184 52.893 1.89e-39 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju06g2168 B3 2.5e-16 CL0405