Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2165 ATGTCTCTCTGGTTTTCTTTTCTAATTTTCAGATTTTTGCTCTCTATTGAATACTGCAACAACAACAACAACAACAACAATACATTCTGTTGCATTTCAAGTAAAGAGAGGCAGAATACAAAAGAAGGTAGCAACCTAGAAGGAGCTTTGAGGCCAAATCAATCAACCATTGGTTCTGAGTCTCGTGCTCTTGAGCGAGCGAAAGAGGTTCAAGCAAATTTATCCAATGAATTTCCAAACCTTATCAAGTATTTGCGCCGATCGCATGTTTCTGGTGCATTTTGGCTGCATCTTCCTAAATATTTCTGTGATTTGCCGATGGACGATACCATGATGGTTTTGGAAGATGAGATTGGAAGAGAATACAAAACAAAATATCTTCCCAGGAAGGTGGGCTTAAGTGGTGGATGGAGATTGTTTTCCGTGGATCACAAGTTAATTGAGGGGCATGTTTTAGTTTTCCATTTAATCCTGCCTTGCAATTTCAAGGTAATATATTTTGTTCCGCAAGAAACCAGTCCAAGCAATAGGACAATGATATGTGATGCTGGCATACCACCATCAGATCAACCTGAAAATACTAGGGATCTGGATCAAAATTTTGGCTCTGCTGTTTTGAATGGGGTTAGATCAGAACCTACAGTTAGTTTCCAACAAGTGATGGGTATTGAGAATTTTAGCATTGTGATTAATGGGATGGTACTTGACTCTCAACTATCGAAACATCTCAAGACCAAATACTATGAACTTTGTTGTAGCAAAAAAATGTTTCTTCATGAGCAACTTGAAGATCAAAACTGTGAACTTGTTATTGGAATGATCTGTGAGATAGTTAATATTGCCGACGCCGTTAGAGCGAGCAAGATCACAACCTCTTCAGACATTTTTGCTTCGTGA 897 0.3857 MSLWFSFLIFRFLLSIEYCNNNNNNNNTFCCISSKERQNTKEGSNLEGALRPNQSTIGSESRALERAKEVQANLSNEFPNLIKYLRRSHVSGAFWLHLPKYFCDLPMDDTMMVLEDEIGREYKTKYLPRKVGLSGGWRLFSVDHKLIEGHVLVFHLILPCNFKVIYFVPQETSPSNRTMICDAGIPPSDQPENTRDLDQNFGSAVLNGVRSEPTVSFQQVMGIENFSIVINGMVLDSQLSKHLKTKYYELCCSKKMFLHEQLEDQNCELVIGMICEIVNIADAVRASKITTSSDIFAS 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2165 298 SUPERFAMILY DNA-binding pseudobarrel domain 76 170 IPR015300 -
Alju06g2165 298 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 58 167 IPR044837 -
Alju06g2165 298 CDD B3_DNA 79 167 IPR003340 GO:0003677
Alju06g2165 298 Gene3D - 57 170 IPR015300 -
Alju06g2165 298 SMART B3_2 81 171 IPR003340 GO:0003677
Alju06g2165 298 ProSiteProfiles B3 DNA-binding domain profile. 81 170 IPR003340 GO:0003677
Alju06g2165 298 Pfam B3 DNA binding domain 83 162 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2165 Alju-ChrAlju06 47777949 47779878 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2165 63 198 B3 DNA Binding Superfamily AT3G19184 41.304 1.50e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Alju06g2165 B3 1.4e-09 CL0405