Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2161 ATGAAAGAAGAGAGTCCCTGCAACAACACAAATTTGCCAAGCGACAAGAAAGCCAGTCCTGAAAGCCCTTGCTTAAAATCATCATCATCATCCACAACAACAAACAACAAAGAACAAGATCGATTTCTTCCGATCGCGAATGTCGGGAGGATCATGAAGAAAATGGTCCCTCCAAATGGGAAAATCTCAAAGGACGCCAAAGAAACTGTCCAAGAATGTGTTTCTGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGCCAGAAAGAAAAGAGGAAGACCATTAATGGCGATGACATTATCTTTGCCATCTCAACTCTTGGCTTTGAGAACTACGTTGATCCTTTGAAATCTTACCTTCAGAAATATAGAGAGATAGAAGGAGAAAAGCTTAATGTTCCCAAACAACAACGTTCTCATCATGATCATCATCATCAAAGCAGGCTACAACACAATAATATTGCTAATATTAATAATATACCTTTAAATACTAGTGTATATTCTTCAACCAATTTCATTTCTCATCAGCCTCCTCCTCCTCCTCCTTATGTGACCTCGGATCAGACATTTTCCATACCTTTCTCATCAACTTCTATTCAGAAACCGTTACAGCCCCAGGACAATATGGATACAGTGGGGCATTGGTAA 654 0.4006 MKEESPCNNTNLPSDKKASPESPCLKSSSSSTTTNNKEQDRFLPIANVGRIMKKMVPPNGKISKDAKETVQECVSEFISFITSEASDKCQKEKRKTINGDDIIFAISTLGFENYVDPLKSYLQKYREIEGEKLNVPKQQRSHHDHHHQSRLQHNNIANINNIPLNTSVYSSTNFISHQPPPPPPYVTSDQTFSIPFSSTSIQKPLQPQDNMDTVGHW 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2161 217 MobiDBLite consensus disorder prediction 198 217 - -
Alju06g2161 217 SUPERFAMILY Histone-fold 39 146 IPR009072 GO:0046982
Alju06g2161 217 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Alju06g2161 217 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Alju06g2161 217 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Alju06g2161 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 27 154 IPR027113 GO:0001228|GO:0006355|GO:0016602
Alju06g2161 217 FunFam Nuclear transcription factor Y subunit B-3 31 155 - -
Alju06g2161 217 MobiDBLite consensus disorder prediction 1 41 - -
Alju06g2161 217 ProSitePatterns NF-YB/HAP3 subunit signature. 73 89 IPR003956 GO:0005634|GO:0006355|GO:0043565
Alju06g2161 217 Gene3D Histone, subunit A 31 162 IPR009072 GO:0046982
Alju06g2161 217 MobiDBLite consensus disorder prediction 1 46 - -
Alju06g2161 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 106 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2161 Alju-ChrAlju06 47712381 47713034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2161 1 217 CCAAT-HAP3 Transcription Factor Family AT2G13570 54.348 2.68e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Alju06g2161 CBFD_NFYB_HMF 2.1e-27 CL0012