Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2117 ATGAATACCAACCAGAATAATACTCATCCCTCTTTCACCGCCAGTGTTATTAACAACAATAATCTTGAGAATATGGCTTCTTCTTGGCCCACTACCCACCCGATTTCTTCGATTTCTTCTTCTTCATCTTCTGGTTTTCTCATTAGTGACATGTTTGGCTTCAACTTGAAGCGAGAAGGAGAAGAGCAGGAAGGAGAGGAAGAAGAAGAAGAGCTTGGAGCCATGAAGGAGATGATGTACAAGATCGCTGCTCTGCGACCCGTCGACATCGACCCTTCCACCATCCGGAAACCTAAGCGGCGGAACGTACGGATCAGCGACGACCCTCAGAGCATAGCCGCCCGCCACCGCCGTGAGAGGATCAGCGAGAAAATTCGCATCCTCCAGAGACTCGTCCCTGGCGGAACCAAGCTCGACACTGCATCCATGCTTGACGAAGCCATTAGATACGTCAAGTTCTTGAAGAGACAAATCAGGTTGCTCCAATCTCCACCACCACCACAACAACACTGCAACAATATCGGTAGTAGTACGATCACCACCACCGCTAATACCACCACCGCCACTCTCTCCGATTGGCCTTATACACCAGCCTCCACCTCCACCTCCGCCACCGCCAGACTAGGGTTTAATGGTGGTGATGATAGCTAA 651 0.5038 MNTNQNNTHPSFTASVINNNNLENMASSWPTTHPISSISSSSSSGFLISDMFGFNLKREGEEQEGEEEEEELGAMKEMMYKIAALRPVDIDPSTIRKPKRRNVRISDDPQSIAARHRRERISEKIRILQRLVPGGTKLDTASMLDEAIRYVKFLKRQIRLLQSPPPPQQHCNNIGSSTITTTANTTTATLSDWPYTPASTSTSATARLGFNGGDDS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2117 216 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 154 IPR011598 GO:0046983
Alju06g2117 216 Pfam Helix-loop-helix DNA-binding domain 113 154 IPR011598 GO:0046983
Alju06g2117 216 CDD bHLH_AtIND_like 106 163 - -
Alju06g2117 216 SMART finulus 111 160 IPR011598 GO:0046983
Alju06g2117 216 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 110 164 IPR036638 GO:0046983
Alju06g2117 216 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 10 195 IPR045843 GO:0003700|GO:0006355
Alju06g2117 216 MobiDBLite consensus disorder prediction 194 209 - -
Alju06g2117 216 FunFam BHLH transcription factor 108 172 - -
Alju06g2117 216 MobiDBLite consensus disorder prediction 194 216 - -
Alju06g2117 216 Gene3D - 108 169 IPR036638 GO:0046983
Alju06g2117 216 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2117 Alju-ChrAlju06 47207839 47208489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2117 72 182 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 76.724 7.77e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Alju06g2117 HLH 2.2e-07 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2117 06 47207839 47208489 Alju06g2117 06 47207839 47208489 ECH