Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2116 ATGCATCTTTCTTCCTGACGAAGTTTGTCGTTTTCTCCCTTCTTCATCTGCTTCGCCGGGTGTTCTGCTTCTGCTTCTGCTTCTCTCGGCTTCCTCCTCCTTGTTGCCGTGAACCTGCTGGTCCGTGTAGTTGTTGCTTCTCGACATTTCCGTCGCCGTCGACTCATTTTTCTTCAGGATGCAGTTTTGATATTTGGTATAAAATCAATTTGTGGAAAGCATTTATCTGTCAAATTTCTAGATGGTTCCATAGAAAGGTTTAATTGGAAGAGATTTAAAGAGCCAGAAAAGTCTTGTGGCCTGGTCTGGCCTGAACCTCCATGGCTGGCCCTGCTTTGTCAAACTTTATCACTTCGTGGTGTACGAGCACAATATATAAATATTGGAGGGGGTGTTGGAGGAGAGATCCCTGACAACAAGCGCCTCCAATATGCCCTGCAGCACATACATGGAATTGGCCGTTCCAAAGCTCACCATGTTGTCTGTGAGCTTGGGGTTGAGAACAAATATGTCAAGGACCTAAGTAAGAGAGAGTTATATTCCCTTCGAGAATTACTCTCCAAGTACATGCTCGGAAATGACTTGAAAAGGTGTGTTGAGAAAGATATAGAAAGGTTGGTGAGTATTCAATGCTACAGAGGTTTCAGACATGTGGATGGGTTACCTTGCAGAGGACAACGCACACATACAAATGCTCGCACCAGGAAGAGCAGGCCAGGTTTTGCTGCATCAAGATCTGCTCAACAATAG 750 0.4507 MHLSSXRSLSFSPFFICFAGCSASASASLGFLLLVAVNLLVRVVVASRHFRRRRLIFLQDAVLIFGIKSICGKHLSVKFLDGSIERFNWKRFKEPEKSCGLVWPEPPWLALLCQTLSLRGVRAQYINIGGGVGGEIPDNKRLQYALQHIHGIGRSKAHHVVCELGVENKYVKDLSKRELYSLRELLSKYMLGNDLKRCVEKDIERLVSIQCYRGFRHVDGLPCRGQRTHTNARTRKSRPGFAASRSAQQ 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2116 249 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 124 236 - -
Alju06g2116 249 Gene3D 30s ribosomal protein s13, domain 2 197 236 IPR027437 -
Alju06g2116 249 SUPERFAMILY S13-like H2TH domain 133 237 IPR010979 GO:0003676
Alju06g2116 249 Gene3D - 132 196 - -
Alju06g2116 249 ProSitePatterns Ribosomal protein S13 signature. 213 226 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju06g2116 249 Hamap 30S ribosomal protein S13 [rpsM]. 125 244 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju06g2116 249 MobiDBLite consensus disorder prediction 224 249 - -
Alju06g2116 249 MobiDBLite consensus disorder prediction 235 249 - -
Alju06g2116 249 Pfam Ribosomal protein S13/S18 133 234 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju06g2116 249 ProSiteProfiles Ribosomal protein S13 family profile. 132 237 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Alju06g2116 249 FunFam Ribosomal protein S13 197 236 - -
Alju06g2116 249 FunFam 30S ribosomal protein S13 132 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2116 Alju-ChrAlju06 47137221 47143149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2116 135 237 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 29.921 1.11e-06 45.4