Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2111 ATGGCTCCGGCCAACTCCTCGGCGGCGGCTCAGAGGCTCATCGGCTTCATCCGCCGTACACAAGCTCCGCGCCAGTCGCCGGCGGCGGCCTCCCCTCCGGTCAAGAAGTATAAGTCATTGACCGAGATAATGGCCAAGGCACGATATGCTGTTGTGGAGAGGGATGATTACAGCGATTTGTTGTGTGACCAATGTGGCTCAGGTGAACGCCCGGACGAGCTGCTTCTGTGTGACAAATGCGATAAAGGCTTCCATATGAAATGCGTGAGGCCTATTGTTGTTAGAGTTCCTATTGGATCATGGCTTTGCCCTAAGTGTTCGGGGGAGAAGAGAGTAAGAAGTTTCTCCCAGAAGAAGATAATTGATTTTTTCCGGATTCAGAAATGTGCTGATCTTAAAAACAAATGCTCTTCTCCCCAAGATGCCAAGAAGCGTAAAAGGCGCACATCACTGATATTGCACAAGAAACGAAGAAGACTATTGCCGTTTATTCCTGCAGAAAATCCTTCCCAGAGACTGAAACAGATGGGTTCTCTTGCTTCTGCTTTAACAGCATTGCATATGGAATTCAGTGATGATCTCACATACTCACCTGAAATGGCTCCTAGGTCTGCTAATCATGCCGATTTTGAAAATGGTGGCATGCAGGTTCTTTCCAGGGAAGATATTGAGACCTTGGAACACTGCAGAGCCATGAGTAGAAGAGGCGAATGCCCTCCCCTTATGGTTGTTTATGATTCATGTGAAGGGTACACAGTTGAGGCCGATGGTTCGATCAAGGATATGACATTCGTTGCTGAATACACAGGCGATGTGGATTACATTAAGAACCGAGAACATGATGATTGTGACAGTCTGATGACCCTTCTGCTAGCAACTGATCCTAATAAAAGTCTTGTAATCTGCCCTGATAAACGTGGAAACATTGCTCGTTTTATAAATGGCATCAACAATCATACACAGGAAGGTAGAAAGAAGCAGAACTGTAAATGTGTGAGATACAATGTTAATGGTGAATGCAGGGTCTTTTTGGTTGCTACTCGTGATATTTCAAAAGGGGAGAGGCTTTATTATGATTATAACGGTTATGAGCATGAATACCCTACTCATCATTTTAATTTCAATGCCTACGTTTCTGAGAGAGAGTGGAAACTACTTTATATGCGTTGTCAGCAAATCCAACTATCAATCTCTCGCTTCCACAAATGCTTTATGGGCATAGTACACCATTAA 1233 0.4453 MAPANSSAAAQRLIGFIRRTQAPRQSPAAASPPVKKYKSLTEIMAKARYAVVERDDYSDLLCDQCGSGERPDELLLCDKCDKGFHMKCVRPIVVRVPIGSWLCPKCSGEKRVRSFSQKKIIDFFRIQKCADLKNKCSSPQDAKKRKRRTSLILHKKRRRLLPFIPAENPSQRLKQMGSLASALTALHMEFSDDLTYSPEMAPRSANHADFENGGMQVLSREDIETLEHCRAMSRRGECPPLMVVYDSCEGYTVEADGSIKDMTFVAEYTGDVDYIKNREHDDCDSLMTLLLATDPNKSLVICPDKRGNIARFINGINNHTQEGRKKQNCKCVRYNVNGECRVFLVATRDISKGERLYYDYNGYEHEYPTHHFNFNAYVSEREWKLLYMRCQQIQLSISRFHKCFMGIVHH 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2111 410 SMART PHD_3 61 107 IPR001965 -
Alju06g2111 410 CDD SET_ATXR5_6-like 236 372 - -
Alju06g2111 410 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 134 371 - -
Alju06g2111 410 FunFam Histone-lysine N-methyltransferase ATXR5 145 373 - -
Alju06g2111 410 ProSiteProfiles Zinc finger PHD-type profile. 59 109 IPR019787 -
Alju06g2111 410 ProSitePatterns Zinc finger PHD-type signature. 62 106 IPR019786 -
Alju06g2111 410 Gene3D SET domain 145 373 IPR046341 -
Alju06g2111 410 Pfam SET domain 272 361 IPR001214 GO:0005515
Alju06g2111 410 Pfam PHD-finger 62 107 IPR019787 -
Alju06g2111 410 CDD PHD_RSF1 61 106 - -
Alju06g2111 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 121 IPR013083 -
Alju06g2111 410 SUPERFAMILY SET domain 233 361 IPR046341 -
Alju06g2111 410 ProSiteProfiles SET domain profile. 239 361 IPR001214 GO:0005515
Alju06g2111 410 SUPERFAMILY FYVE/PHD zinc finger 28 107 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2111 Alju-ChrAlju06 47071237 47076369 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2111 59 113 C2H2 Transcription Factor Family AT3G01460 37.500 1.30e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju06g2111 SET 3.5e-07 No_clan