Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2109 ATGAACTCGCCGGGGAATTCCACTGGCGGCGAAACACCACCGTCGTCTCAGAACCAAACTCAACTCCAATGGCCTGCGCAAACTCATGTTACAGCCAACAATGAATCGAGCATTATCAACGAACCATCTCTGCCATTGCATAACGCCGGCGGAAGAAGAGCACCACCGTCGTGGCCCCGGCGTTTTGGAATCCAAGAGCCTCGCCAACCTCCTCTTGGATCCAACCAAGAATCTCACATTATCAACCAACAAGTTCCGCCATCGCATTATGCCACCGCTGGAAGAAGAGCACCACCGTCGTGGCCCCGGCGTCTGGGAATCGAAGAACCTCGCCAACCTCCTCTTGGAGCCAACCAAGAATCTCACATTATCAACGATCAAGTTCCACCACCGCATCATGCCACCGCCGGAAGAAGAACACCACCGTCGTGGCCCCGGCGTCTTGGAATCGAGGAGCCTCGCCAAACTCGTCTTGTAGCCAACCAAGAATCTCACATCATCAACGAACCATTTCTGCCACCGCATCGTGCTGCCGACGGCAGAAGAACACCACCGTCGTGGCCCGAGCGTCTTGGAATCGAGGAGCCTCGCCAAACTCCTTTTATAACCAACCAAGAATCTCACATTATCAACGAACCATCTCTGCCACTGCATCGTGCCGCCGACGGCAGAAGAGCACCACCGTCGTGGCCCCGGCGTCTGGGAATCGAAGAGCCTCGCCAACCTCCTCTTGGAGCCAACCAAGAATCTCACATTATCAACGATCAAGTTCCGCCACCGCATCATGCCACCGCCGGAAGAAGAACACCACCGTCGTGGCCCCGGCGTCTTGGAATCGAGGAGCCTCGCCAAACTCGTCTTGTAGCCAACCAAGAATCTCACATCATCAACGAACCATTTCTGCCACCGCATCGTGCTGCCGACGGCAGAAGAACACCTCCGTCGTGGCCCCTGCGTCTTGGAATCGAGGAGCCTCGCCAAACTCCTCGTATAGCCAACCAAGAATGTCACATTATCAACCAACCATTTCAGCCACCGCATCATCATGCCGCCGACGGAAGAATAACACCACCGTCGCCTTCTTCCCAGAGACAACTTGGAATCCAAGAGCCGGGCCAACCTCCTTCTAGAGTCAACAACGAATCACTCACTATCAGGCAACCATCGCGGCCACTATACTCCGCCGGCCAAAGAACAGGTTTACTGGACTTAAAAGATCAACTTCTTCTGCTATCAAAAAGAGATCAACTTCTTCAATATCAACAACATGCTCTCAGAGTCAACCCAGAATCCCACACCATCAGGACACCATCGCCGCCGCTATACTCCGCTGGCCAAATAGCAGGTTTACTGGACTTGAAAGATCAACTTCTTCTGCTATCAAAAAGAGATCAACTTCTTCAATATCAACAACATGCTCTCAGAGTCAACCCAGAATCCCACACCATCAGGACACCATCGCCGCCGCTATACTCCGCTGGCCAAATAGCAGGTTTACTGGACTTGAAAGATCAACTTCTTCTGCTATCAAAAAGAGATCAACTTCTTCAATATCAACAACATGCTCTCAGAGTCAACCAAGAATCCCACACCATCAGGAAACCATCGCCGCCGCTATACTCCGCCGGCCAAAGAACAGGTTTACTGGACTTAAAAGATCAACTTCTTCTGCTATCAAAAAGAGATCAACTTCTTCAATATCAACAACATGCTCTCAGAGTCAACCAAGAATCCCACACCATCAGGAAACCATCGCCGCCACTATACTCCGCCGGCCAAAGAACAGGTTTACTGGACTTAAAAGATCAACTTCTGCTGCCATCAAAAAAAGATCAACTTCTTCAATATCAGCAACATGCTCTCAGAGTCAACCAAGAATCCCACACTATGAAGAAACCGTCGTCGTCGTCCGAAGACCGGCGTGGCGGCGATGTCTCTCTTCGCTGTGCCAATTGCAGCAACACTTCCACGACCCAGTGGAGAAGTGACCCCACAGTTCAAAAGTCTCTGTGCAATGCCTGTTGGTTCAGACTCAACAGGGAGGAAGAGACAAGAGCCGCATCGGGATTACAGTCATCGAACATAGTGTTGTCACCGGAAATGTCATCATCGGCGGCAGTAGCAAGTTTTTTGCAGGAAGCACGAAACAGACTTGAGCTCATGGGAAATAATGCCAACCCATTTGTGCCGGAAAATAACTTCTTGGGACACTCTTCGGGATTACAGTCATCTGACATAGTGTCGCCGCCGCAGGAAATGTCACCACCGGCGGCACCAAGTCTTGCAAACAGTGTTCAGCTCGGGGAAAATATCTCATTCGGAGACCCATCGGGATTACAGTCATCATCACCATTGCGGGACCCACCAGAAGTAGCGTCAATGCTGGAGGAGTTCAGGCAAAACCTGACGGATAAAACTCCAGACAACAGCCCTGGAGCATAG 2442 0.5127 MNSPGNSTGGETPPSSQNQTQLQWPAQTHVTANNESSIINEPSLPLHNAGGRRAPPSWPRRFGIQEPRQPPLGSNQESHIINQQVPPSHYATAGRRAPPSWPRRLGIEEPRQPPLGANQESHIINDQVPPPHHATAGRRTPPSWPRRLGIEEPRQTRLVANQESHIINEPFLPPHRAADGRRTPPSWPERLGIEEPRQTPFITNQESHIINEPSLPLHRAADGRRAPPSWPRRLGIEEPRQPPLGANQESHIINDQVPPPHHATAGRRTPPSWPRRLGIEEPRQTRLVANQESHIINEPFLPPHRAADGRRTPPSWPLRLGIEEPRQTPRIANQECHIINQPFQPPHHHAADGRITPPSPSSQRQLGIQEPGQPPSRVNNESLTIRQPSRPLYSAGQRTGLLDLKDQLLLLSKRDQLLQYQQHALRVNPESHTIRTPSPPLYSAGQIAGLLDLKDQLLLLSKRDQLLQYQQHALRVNPESHTIRTPSPPLYSAGQIAGLLDLKDQLLLLSKRDQLLQYQQHALRVNQESHTIRKPSPPLYSAGQRTGLLDLKDQLLLLSKRDQLLQYQQHALRVNQESHTIRKPSPPLYSAGQRTGLLDLKDQLLLPSKKDQLLQYQQHALRVNQESHTMKKPSSSSEDRRGGDVSLRCANCSNTSTTQWRSDPTVQKSLCNACWFRLNREEETRAASGLQSSNIVLSPEMSSSAAVASFLQEARNRLELMGNNANPFVPENNFLGHSSGLQSSDIVSPPQEMSPPAAPSLANSVQLGENISFGDPSGLQSSSPLRDPPEVASMLEEFRQNLTDKTPDNSPGA 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2109 813 SMART GATA_3 643 694 IPR000679 GO:0006355|GO:0043565
Alju06g2109 813 MobiDBLite consensus disorder prediction 1 148 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 219 243 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 299 320 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 255 277 - -
Alju06g2109 813 ProSiteProfiles GATA-type zinc finger domain profile. 643 685 IPR000679 GO:0006355|GO:0043565
Alju06g2109 813 Gene3D - 644 697 IPR013088 GO:0006355|GO:0008270
Alju06g2109 813 MobiDBLite consensus disorder prediction 356 392 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 170 192 - -
Alju06g2109 813 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 642 685 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 341 392 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 731 750 - -
Alju06g2109 813 PANTHER GATA TRANSCRIPTION FACTOR 18 615 699 IPR044272 GO:0003700|GO:0009908
Alju06g2109 813 MobiDBLite consensus disorder prediction 757 787 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 69 89 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 624 644 - -
Alju06g2109 813 MobiDBLite consensus disorder prediction 1 43 - -
Alju06g2109 813 Pfam GATA zinc finger 649 677 IPR000679 GO:0006355|GO:0043565
Alju06g2109 813 CDD ZnF_GATA 648 695 IPR000679 GO:0006355|GO:0043565
Alju06g2109 813 MobiDBLite consensus disorder prediction 731 791 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2109 Alju-ChrAlju06 47044063 47046604 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2109 634 707 C2C2-Gata Transcription Factor Family AT2G18380 38.961 1.28e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Alju06g2109 GATA 3.5e-09 CL0167