Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2093 ATGGCTGCTTCTGCTAATTCTCAAGTACTGATCTTCCATGACCTTATTGGCCAATATTACTCCAGAAGGTTACTATTCCTTCACTCCCACCACAGCTCAACCAACCCACCATCTTCTTCTAACAACAACTACACAGAATCTTTGTTCCTCGGAGACGGTAACTTCAACGCAAATGTTATCATGGTACTGTCTGTCCTCTTATGTGCTCTCTTCTGCTCATTGGGATTAAACTCCATCATCAGATGTGCCCTAAGGTGTTCCAACATCATCGTCCTCAACAATAACAACGGCTCATCTTCAAACACTCCCGCGGCGGCTCTGTTGGCCAACACCGGAGTGAAGAAGAAGGCCTTAAAGACTTTCCCTACAGTGACATACTCTTATGAGTTGAACCTCCCAGGTTTAGACAAAGAGTGCGCGATTTGTCTCTCCGAGTTTAACAATGGCGATCGCCTTCGGATTCTTCCCAAATGCAACCATGGCTTCCATGTTCGTTGTATTGACAAGTGGCTGAGTTCGCATTCTTCTTGCCCTAAGTGCAGACACTGCCTTATTCAGACATGTCACAAGATCGTAGGGTCAAGATCATCAACCACAACTACGACATCGTCCCAAGCTTCTTCTGTTCCTTCTGCTGAAACTATTGTGAGGATCGTACCTTTAGAACCAGAGGGTATGGTGCGTAACTATGCCTAG 696 0.4583 MAASANSQVLIFHDLIGQYYSRRLLFLHSHHSSTNPPSSSNNNYTESLFLGDGNFNANVIMVLSVLLCALFCSLGLNSIIRCALRCSNIIVLNNNNGSSSNTPAAALLANTGVKKKALKTFPTVTYSYELNLPGLDKECAICLSEFNNGDRLRILPKCNHGFHVRCIDKWLSSHSSCPKCRHCLIQTCHKIVGSRSSTTTTTSSQASSVPSAETIVRIVPLEPEGMVRNYA 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2093 231 CDD RING-H2_EL5-like 138 181 - -
Alju06g2093 231 Pfam Ring finger domain 137 181 IPR001841 -
Alju06g2093 231 SUPERFAMILY RING/U-box 117 186 - -
Alju06g2093 231 FunFam RING-H2 finger protein ATL73 99 186 - -
Alju06g2093 231 SMART ring_2 139 180 IPR001841 -
Alju06g2093 231 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 185 IPR013083 -
Alju06g2093 231 PANTHER RING-H2 FINGER PROTEIN ATL78 15 226 IPR044602 GO:0016567|GO:0016740
Alju06g2093 231 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2093 Alju-ChrAlju06 46846581 46847276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2093 23 190 C3H Transcription Factor Family AT1G76410 45.349 4.93e-41 137