Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2076 ATGGTTAGACGCGTGCTTTCCAAAAATATCTTCATTTCCTCATCCATTTCTTTTTCATTATCGTCAGTTCGTCCTCTTATCTTTCAAATTTGTCACTTCCCTAGCTCGTCGAATAGCTCCTCATTACTTAGACGCCATTATCATGAATCCCGAAATATACCAGTCTCAGTTTGGTGGGATTTTGAGAATTGCCATCCACCTTCTGATGTGAATGTTCTTAGAATTCATCACTTCATAAAGGAGGCAGTTAGAGCCAAAGGGATCATGGGGCCTCTTAAAATTAAGGCATTTGGTGACGTTTATCAGCTCTCAAGGCTCAACCAGGAAGCTCTTGCGTCCACTGGGATCAAAATCATCCACGTTCCTAAAGGTGGAAAGAATAGTGCTGATAAATCTCTTCTTATTGACCTCATGTTTTGGGTTTCCCAAAATCCTCCTCCTGCGCATTTGTTTCTAATTTCAAGTGATAAGGATTTTGCTGAAGTATTGCACCGTTTGAGAATGAATAACTACAACATCCTAATTGCTGGTTTAGAGACCCCTTATCTTCTGTGCAATGTAGCAACTATAGTGTGGCACTGGAATTCATTGCTTAGAGGAGAAAATCTTGATGGAAAACATTTCAACCATCCTCCTGATGGTTTGTATGGTTGTTGGTGTGATCATCATGATGTGACTCTTGAAGACGCTTTCTTAGATGGAAAGCAATTTACCCGTTCACAAACTCAGGAATTCCCTAAACCTACATCAGGTTCGAACGTGCGCCCAATTCCAAAGGAGGTTGTGCGGCAGCTTCATCAGATATTGAATTTGTATCCAAACGGTGTCTCTTTATCATGTCTTCCAACTCTGTTGGAAAGAGCTGGTATCTACCTGGATAAAGATTACTATGGATGTAAAAGGTTTTCCCTGTTTCTTTCATCAGTGGTATGTGTACATGTTCGGTTTCATCCTGATAGAGGACTTGTTGCACATTACGTCCCCAAAGAATCTCCAGAACCTATTGAAAGCAGTTTTGTACCATCCACAGAATTAGTTGAAAATGAGGAGTTGAATCATGTGGCTACTTCAACAGAATTAGATGATACTTCTGTAAAGTTAAGTGCTGATGAAAAATATGTTGAGCCAACAAAAAAGGAACCTCTAACTTTCTTGGGTTGGATTAAAAGTTGGTGGCCATTCAGGAAAAAAGTTGGAAACATGCATAATTTGACTGCTCCTGGGAATGAGATGGTTAGTAATGCTAAAGAGCTTGAGTTGTCAAATCTGACACAGAGGGTTAGTCATTCTGAAGAGCTCCAGTCATTAAAACAGAGACAAATGGCTAGTCAATTTAAGGAGCCTGAGTTATCAGAACTGGGACAGACGGTGAATCATTATGGAGAGCCGGAGTTATTTTCCTGCAGTTCCTTTTGGAAGGAAGTGGAATCTTTTGTTTTGTCCTCTAAAGGAGCAATTCTTGTGTTCCACTCAAGAAGCAGGAAGGATATGGCGCTCAGTTTTAAAAAGTATGGACCCCATGTTCTCCACTCTCTTAGTGAAAATGATCTCCTTCTATTGGTGGATTTGCTAATATCTGAGAAGAAATGGTTGGAGGAAAGACCTTCTCAGACTTTTCCTTTCCGTGCCATTCCAAGCAGAACAACACGAAGTCACTTGCAAAAATCATCAGAATTTGAAGTTGATAAAAAAGGGAGTATTCCTCATACTGGGGTTTCTTCATCAGCCACTCGAAAACGACACACTGAGAAGTCTAGAATTGACATTTTAGCAGATGTTAAGAAACTTGTGCGTGAGCTGTTGAGAGAATTCCCAGATGGGTGTAATATGGGTCTGATACCAACTCGCTTTCAAGAGAAGTATGGCTATCCTTTAGATATTGGGAAGCTTGATTGTTCTAAGTTATCGCTCCTTATACAGAGATTGCCTGGAGTAAGAACAGAGCATTCTCATTTCTTTCCTGCAAATTATGGCTTACGTGATTGTGATAAGGAAACTTCAACTCTCAAAACTCAACAGACGCAACCAAGTGATGTAGTGTACTACTATTCAGAGAATGAGTTCTATGATTCACACTCTGAAGATGATCGAAAAGACTCCTCATGGGAAGAATTAGGACCTGTTTTTGTCACCAATTCCAACGAGAGTGACCTGGAATCAAAACCAAGCGAGAAAGCAATAGAGCTGAAGACCGCAATAGATCCTGATTATGAATCCGATCTCTCTGAGGATGATTATTCCGAACTGGGAGGAGATAACTCCTGTTCAACCCAATCAGAGTATGATCATGTCTTTCCTGCAAATCATGGCACATGTGATTCTGGTAAGGAAACTTCAATTCTCAAAACACAAGAGACAGAACTAAATGATGTAATGTGCCGCTATTCAGAGGATGAATTTTATGATTCATACTCTGAAGATGATCGGGAAGACTCCCCATGGGAGGAATCAGGGCCTGTTTCTGTCAGCGATCCCGATGAGAGTGACCTGGAGTCAAAACCAGGGCAGGAAGCTATAGAGCTGAAAACCGCAATAGATCCTGATTATGAACCTGATCTCTCTGACGATGATTCTTCTGATTCTGGAGGAGATCATTCCTGTTTAACTCAATCAGAAGAGGAAGGTGAGCCAAAACTCAATGGGGAAGACAGTTCTTTGCAAAATCTGGACTCAGCCTATGGCAGTCATGAAGGAGAGGATAGTGTGAATCCGAAGAAGGCCAATACAGAAGGCAATGGTCTAGCTGATGGTTTAAATGCACCTAGGATTTCCACTCCTGCTACCAGTTCAGGAATTCATTTAGGGAGCTATAAAGAGAAGCACAAGCATAAGAAAAACTCTTCATTTGATGATGAACCAGTATCACACCAGAATAAGGAGCTGATTGAAGGGATATTACGATGCTTGAAAAGGGCAGATGACGTGAAGATGCCAAATTGTGGAATTCCAGGAGTTCAGAATATCTGA 2967 0.4098 MVRRVLSKNIFISSSISFSLSSVRPLIFQICHFPSSSNSSSLLRRHYHESRNIPVSVWWDFENCHPPSDVNVLRIHHFIKEAVRAKGIMGPLKIKAFGDVYQLSRLNQEALASTGIKIIHVPKGGKNSADKSLLIDLMFWVSQNPPPAHLFLISSDKDFAEVLHRLRMNNYNILIAGLETPYLLCNVATIVWHWNSLLRGENLDGKHFNHPPDGLYGCWCDHHDVTLEDAFLDGKQFTRSQTQEFPKPTSGSNVRPIPKEVVRQLHQILNLYPNGVSLSCLPTLLERAGIYLDKDYYGCKRFSLFLSSVVCVHVRFHPDRGLVAHYVPKESPEPIESSFVPSTELVENEELNHVATSTELDDTSVKLSADEKYVEPTKKEPLTFLGWIKSWWPFRKKVGNMHNLTAPGNEMVSNAKELELSNLTQRVSHSEELQSLKQRQMASQFKEPELSELGQTVNHYGEPELFSCSSFWKEVESFVLSSKGAILVFHSRSRKDMALSFKKYGPHVLHSLSENDLLLLVDLLISEKKWLEERPSQTFPFRAIPSRTTRSHLQKSSEFEVDKKGSIPHTGVSSSATRKRHTEKSRIDILADVKKLVRELLREFPDGCNMGLIPTRFQEKYGYPLDIGKLDCSKLSLLIQRLPGVRTEHSHFFPANYGLRDCDKETSTLKTQQTQPSDVVYYYSENEFYDSHSEDDRKDSSWEELGPVFVTNSNESDLESKPSEKAIELKTAIDPDYESDLSEDDYSELGGDNSCSTQSEYDHVFPANHGTCDSGKETSILKTQETELNDVMCRYSEDEFYDSYSEDDREDSPWEESGPVSVSDPDESDLESKPGQEAIELKTAIDPDYEPDLSDDDSSDSGGDHSCLTQSEEEGEPKLNGEDSSLQNLDSAYGSHEGEDSVNPKKANTEGNGLADGLNAPRISTPATSSGIHLGSYKEKHKHKKNSSFDDEPVSHQNKELIEGILRCLKRADDVKMPNCGIPGVQNI 988
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2076 988 ProSiteProfiles OST-type HTH domain profile. 257 330 IPR025605 -
Alju06g2076 988 PANTHER LIMKAIN B LKAP 40 557 IPR024768 GO:0005777|GO:0010468
Alju06g2076 988 ProSiteProfiles OST-type HTH domain profile. 589 663 IPR025605 -
Alju06g2076 988 Pfam NYN domain 55 188 IPR021139 GO:0004540
Alju06g2076 988 Gene3D - 48 195 - -
Alju06g2076 988 CDD LOTUS 590 651 - -
Alju06g2076 988 Pfam OST-HTH/LOTUS domain 259 319 IPR025605 -
Alju06g2076 988 Pfam OST-HTH/LOTUS domain 590 651 IPR025605 -
Alju06g2076 988 MobiDBLite consensus disorder prediction 858 880 - -
Alju06g2076 988 Gene3D - 590 652 IPR041966 -
Alju06g2076 988 MobiDBLite consensus disorder prediction 802 956 - -
Alju06g2076 988 CDD PIN_limkain_b1_N_like 54 176 - -
Alju06g2076 988 MobiDBLite consensus disorder prediction 733 762 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Alju06g2076 Alju-ChrAlju06 46711909 46715465 Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2076 55 200 C2H2 Transcription Factor Family AT5G61190 40.136 1.02e-29 125