Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju06g2056 | ATGGACTTTGACGAGTATGATTACCTGGAAAAGACAGTGGAGGAGCAGGGAGGTCAAGATTTGACGAAGAGCAAGGAGAAACACGATAAGAGTGAGAGGGCTTACAGGAAGCGTGATGTCGACGATGATGTCGACGGTGAAGACAAGAAGAGCAAGAGGTCCAGGGGCGACGACGAGAATGGTTCGAGGAAAGATCGTGAGGACCGCGAGAAAGAACGTTCTAGTCGAGAAAAGGAACGGCATAGGAGTAGCAGAGACAGAGAGAGGGACGGTGATAGGGAGCGAGAGAGGAGTAGTAGGGAGAGAGATAGGGAGAAAGAGAGAGACAAGGAGAGGGAAAGAGAGAGAAGGGATAGGGAGAGAAGAGACAGAGACAAGGAGAGGGAAAGAGAACGGGAGAGAAGGGAGAAGGAGAGGGAGAAGGAGAGGGAGAGAGAAAGGGAGGAGAAAGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGAACGAGATAGAGAAAGAGAACGAGAATTGGAGTCTAGAGACGGCCGGAGATTTAGGGATAAGAAAGAGGCTGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTTTTTGCATACCAGATGCCTCTAAAAGCAACAGAGAGAGATGCTTATGAATTCTTCTCGAAAGCTGGCAAGGTGAGGGATGTTCGTTTGATCATGGATAGGAATTCAAGGCGGTCTAAAGGAGTTGGGTATATTGAATTTTATGATGTGATGTCGGTGCCGATGGCAATTGCTCTTTCCGGCCAACTGCTTCTGGGACAACCTGTAATGGTCAAACCTTCAGAGGCTGAAAAAAACCTTGTTCAGTCTAATGCTACTAGTGGAGGTGCGGGGGTAGCAGGACCATATGGAGCAGTGGACAGGAAACTGTATGTGGGGAACCTTCACTTTAACATGACTGAGGGTCAGCTGCGAGAGATTTTTGAGCCGTTTGGTCCAGTGGAGCTTGTTCAGCTACCCCTTGACATGGAGACAGGACATTGCAAGGGTTTTGGCTTTGTACAATTTGCTAATCTTGAACATGCCAAGGCAGCTCAGAGTTTGAATGGAAAATTAGAAATTGCTGGTAGGACTATCAAGGTTTCATCGGTAACAGATCATGTTGGAGGCCAAGATGCAACTGCAAAATCTGCAGATTTGGATGATGATGAAGGTGGATTGTCATTGAATGCTCAATCAAGAGCGATGCTTATGGCGAAGTTGGATCGCTCTGGTATTGCTACGAGCATTGCAGGGTCTATGGGTGGTGTGCCTCTCGTGAATGGCTCAGCTCCTGCCCAGCAGGCTGTTAGTTTGCCAGTTGGGGGTCCAGGTATAGTACCTGCATCAGCTCTCCCAACAGCCATTGTGCCTACCCCAGGAGCAGAGCCAGTTGGAACCCCCAGCGAGTGCTTGTTGTTGAAGAATATGTTTGATCCAACTACTGAGACGGAACCAGATTTTGATGATGATATCAAGGAGGATGTTGCAGAAGAATGTTCTAAATTTGGTCGGGTGAAGCATATTTATGTTGACAAAGATAGCGCAGGTTTTGTGTATCTACGGTTTGAAACGGTGCAAGCAGCAAGTGCTGCTCAACAGGCAATGCACATGAGATGGTTTGCCCGCAGGTTGATTTCAGCAGTGTTCATGCAACCTCAGGTATATGAAGCGAAGTTTAGAGAAGCTTGA | 1701 | 0.4797 | MDFDEYDYLEKTVEEQGGQDLTKSKEKHDKSERAYRKRDVDDDVDGEDKKSKRSRGDDENGSRKDREDREKERSSREKERHRSSRDRERDGDRERERSSRERDREKERDKERERERRDRERRDRDKERERERERREKEREKEREREREEKERSRRSRSRSERDRERERELESRDGRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDAYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNATSGGAGVAGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDMETGHCKGFGFVQFANLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGGQDATAKSADLDDDEGGLSLNAQSRAMLMAKLDRSGIATSIAGSMGGVPLVNGSAPAQQAVSLPVGGPGIVPASALPTAIVPTPGAEPVGTPSECLLLKNMFDPTTETEPDFDDDIKEDVAEECSKFGRVKHIYVDKDSAGFVYLRFETVQAASAAQQAMHMRWFARRLISAVFMQPQVYEAKFREA | 566 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju06g2056 | 566 | FunFam | Splicing factor, CC1-like protein | 468 | 566 | - | - | |
| Alju06g2056 | 566 | SMART | rrm1_1 | 299 | 372 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | SMART | rrm1_1 | 197 | 269 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | SMART | rrm1_1 | 474 | 551 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | CDD | RRM3_RBM39_like | 472 | 554 | - | - | |
| Alju06g2056 | 566 | ProSitePatterns | Rrf2-type HTH domain signature. | 411 | 429 | IPR030489 | - | |
| Alju06g2056 | 566 | Coils | Coil | 110 | 163 | - | - | |
| Alju06g2056 | 566 | CDD | RRM1_RBM39_like | 197 | 269 | - | - | |
| Alju06g2056 | 566 | Pfam | linker between RRM2 and RRM3 domains in RBM39 protein | 391 | 491 | IPR029123 | - | |
| Alju06g2056 | 566 | CDD | RRM2_RBM23_RBM39 | 300 | 377 | - | - | |
| Alju06g2056 | 566 | FunFam | Splicing factor CC1-like | 120 | 281 | - | - | |
| Alju06g2056 | 566 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 203 | 265 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 300 | 370 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 497 | 549 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | Gene3D | - | 189 | 282 | IPR012677 | - | |
| Alju06g2056 | 566 | NCBIfam | splicing factor, CC1-like family | 87 | 563 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Alju06g2056 | 566 | SUPERFAMILY | RNA-binding domain, RBD | 298 | 556 | IPR035979 | GO:0003676 | |
| Alju06g2056 | 566 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 273 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | FunFam | Splicing factor CC1-like | 282 | 387 | - | - | |
| Alju06g2056 | 566 | Gene3D | - | 294 | 389 | IPR012677 | - | |
| Alju06g2056 | 566 | MobiDBLite | consensus disorder prediction | 10 | 195 | - | - | |
| Alju06g2056 | 566 | SUPERFAMILY | RNA-binding domain, RBD | 189 | 289 | IPR035979 | GO:0003676 | |
| Alju06g2056 | 566 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 298 | 376 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 473 | 556 | IPR000504 | GO:0003723 | |
| Alju06g2056 | 566 | PANTHER | SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED | 1 | 564 | IPR006509 | GO:0003723|GO:0005634|GO:0006397 | |
| Alju06g2056 | 566 | Gene3D | - | 468 | 566 | IPR012677 | - | |
| Alju06g2056 | 566 | MobiDBLite | consensus disorder prediction | 1 | 195 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju06g2056 | Alju-ChrAlju06 | 46201127 | 46208223 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju06g2056 | 270 | 371 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.893 | 5.98e-09 | 57.0 |