Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g2053 ATGTGTTTCTTATTAAAGGTGGCGAATCCAGCGAATTCCTCTCACAATCACAACAACGTTGTTGATGAACACAACACAATTGTCTTCCCTGGTATGGATAGGGACAGAGAGATGTCTACTATGATCTCTGCTTTGGCTCACGTCGTCGCCGGAGATATTCCCGGTGATTCTGCTGAGATTTCTGGTGGTGGCGATGGCGGTGGCTCTGTTACATTAAGCTCGCCCTTGGATTTGTCGACGGCGACGACGCCGTCTTCGAGTTCTTCGTCTTATGGTGGTAGCTCTGTTTTGAAGAGAAGTAGGGAAGATAATGTTAGAGGCTCTTCGTCTTCCACTGCTATTATTCAAACAGTTGCAGCAGAAGGTTCAAGAGGAGAGAGAGTTCAAATGTATGAATATAGCTGTAATACACAGAACGTGAGAGTTTCAGAAGAAGGAAGAAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGCAAGTGGGCAGCTGAAATCAGAGATCCTTTTAAAGCTGCCCGTGTTTGGTTGGGCACCTTCGACACGGCGGAGGCGGCTGCCCGAGCATACGATGAAGCTGCCCTGCGTTTTAGAGGCAACAAGGCCAAGCTTAATTTCCCTGAAAATGTCAGACTCCGGCAACCACCTCCACCGGCACCGCCTCCGATGACGACGACCCATTTGAGAGGTTCAGGTTCTGCAACTACCCTTTTTTCCATTCCGACGTCGGCCGAGCCGATTGTTCATTCGGAATCTCTTCACCACCACCACCACTCTCTCATGAGTCCTCAGCCGGCGGCGGCGACCGGTGATTTTTATGGCTACCCGCAGTTTTCGGAGTTTCCTATGAATTTTTATGATCAGACGGTTATGTCATCTTCAATGGCTCATCATGTACAGTCGTCGGCATTGCCGTCAGCTTTGTCATCGTCGCCGTCTTCGACGGTGGCATCTTCCACTAGCTCTCAGCAAGGAGGTTTGCCGCTTCCGGGTTGGGTCATACTGGAAACGGATCAGGAAAGCGGGTCCGAATACTTACCATCAGCATGGTCATCAGCTTCGGGTCATAGTGCTTCTTCCTCTATATGA 1086 0.5009 MCFLLKVANPANSSHNHNNVVDEHNTIVFPGMDRDREMSTMISALAHVVAGDIPGDSAEISGGGDGGGSVTLSSPLDLSTATTPSSSSSSYGGSSVLKRSREDNVRGSSSSTAIIQTVAAEGSRGERVQMYEYSCNTQNVRVSEEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVRLRQPPPPAPPPMTTTHLRGSGSATTLFSIPTSAEPIVHSESLHHHHHSLMSPQPAAATGDFYGYPQFSEFPMNFYDQTVMSSSMAHHVQSSALPSALSSSPSSTVASSTSSQQGGLPLPGWVILETDQESGSEYLPSAWSSASGHSASSSI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g2053 361 MobiDBLite consensus disorder prediction 304 326 - -
Alju06g2053 361 FunFam Ethylene-responsive transcription factor 2 148 207 - -
Alju06g2053 361 SMART rav1_2 149 212 IPR001471 GO:0003700|GO:0006355
Alju06g2053 361 Pfam AP2 domain 149 198 IPR001471 GO:0003700|GO:0006355
Alju06g2053 361 ProSiteProfiles AP2/ERF domain profile. 149 206 IPR001471 GO:0003700|GO:0006355
Alju06g2053 361 MobiDBLite consensus disorder prediction 72 97 - -
Alju06g2053 361 PANTHER DNA-BINDING DOMAIN 111 300 IPR044808 GO:0003700|GO:0009873
Alju06g2053 361 MobiDBLite consensus disorder prediction 304 332 - -
Alju06g2053 361 SUPERFAMILY DNA-binding domain 149 207 IPR016177 GO:0003677
Alju06g2053 361 MobiDBLite consensus disorder prediction 56 110 - -
Alju06g2053 361 PRINTS Ethylene responsive element binding protein signature 172 188 IPR001471 GO:0003700|GO:0006355
Alju06g2053 361 PRINTS Ethylene responsive element binding protein signature 150 161 IPR001471 GO:0003700|GO:0006355
Alju06g2053 361 CDD AP2 149 208 IPR001471 GO:0003700|GO:0006355
Alju06g2053 361 Gene3D AP2/ERF domain 148 208 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g2053 Alju-ChrAlju06 46137458 46139439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g2053 157 252 AP2-EREBP Transcription Factor Family AT5G64750 65.686 1.32e-35 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju06g2053 AP2 4.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g2053 06 46137458 46139439 Alju06g2053 06 46137458 46139439 ECH