Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1997 ATGAATTCTCCATCCACACAGTTTGTTTCTTCAAGGAGGATGGGTGTTTATGATCCAATCCAACAGATTAATATGTGGGAAGAAAATTTCAAAAGCAATGGTAATTTAAGTGCCTTAATTTGTGAAGCAGATGGGAAGTTAATTAATCAGCTAGAGGATGCTTCTCGTAACACATTGGGTACGTCCAAGATGTATGGCCAAGAAGCTAATAAACCTAATGATAAGATACAAAGACGTCTTGCACAAAATCGGGAGGCTGCTCGTAAGAGTCGTCTGAGGAAAAAGGCCTATGTGCAGCAATTAGAATCAAGTCGTTTGAAGCTGATCCAGATAGAGCAAGAGCTCAACCATGCGAGACAGCAGGGTTTATATGTGGGCGGGGCATTGGATTCGAATAATATGGGTTTTCCTGGAACTGTTAATTCAGGTATTACGACCTTTGAAATGGAATATGGACACTGGGTTGAAGAGCAAAATAGACAAATCTGTGAACTAAGAGGTGCTTTAAATGCTCATATTAGTGACATGGAGCTCAGGATACTTGTAGATAGTATAATGAATCACTATTTTGAACTCTATCGAAAGAAGTCTGCCGCTGCAAAAGCAGATGTTTTCTATGTGATGTTTGGTATGTGGAAAACTACCGCTGAGCGGTTTTTCATGTGGATTGGAGGCTTTCGTCCCTCTAAGCTTCTAAAGGTCATTGCCCCTCTGATTGAACCCTTGACCGAGCAACAACGGTTTGATATCTCTAACCTTGAACAATCTTGCCAGCAAGCAGAAGATGCCCTTTCTCAAGGTATGGATAAACTCCAGCAAACACTTGGCGATACTATAGCAGCAGGACCTCTAGTTGAAGGAACTTATATTCCTCAGATGGCTGCTGCAATGGAGAAAATGGAAGCTCTTGTGAGCTTTGTAAACCAGGCTGATCATCTTCGTCAGGAAACATTGCAGCAGATGTTTCGGATCCTAACAATCCGTCAGGCTGCTCGATACCTACTTACTCTAGGTGAATACTTCCAACGCCTACGATCCTTGAGCTCACTTTTAGCTAATCGTCCTCGGGAACCAGCTTAG 1080 0.4241 MNSPSTQFVSSRRMGVYDPIQQINMWEENFKSNGNLSALICEADGKLINQLEDASRNTLGTSKMYGQEANKPNDKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLIQIEQELNHARQQGLYVGGALDSNNMGFPGTVNSGITTFEMEYGHWVEEQNRQICELRGALNAHISDMELRILVDSIMNHYFELYRKKSAAAKADVFYVMFGMWKTTAERFFMWIGGFRPSKLLKVIAPLIEPLTEQQRFDISNLEQSCQQAEDALSQGMDKLQQTLGDTIAAGPLVEGTYIPQMAAAMEKMEALVSFVNQADHLRQETLQQMFRILTIRQAARYLLTLGEYFQRLRSLSSLLANRPREPA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1997 359 Coils Coil 250 270 - -
Alju06g1997 359 FunFam BZIP family transcription factor 74 123 - -
Alju06g1997 359 SMART brlzneu 71 131 IPR004827 GO:0003700|GO:0006355
Alju06g1997 359 Gene3D - 74 123 - -
Alju06g1997 359 Coils Coil 94 121 - -
Alju06g1997 359 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 78 93 IPR004827 GO:0003700|GO:0006355
Alju06g1997 359 Pfam bZIP transcription factor 73 103 IPR004827 GO:0003700|GO:0006355
Alju06g1997 359 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 73 115 IPR004827 GO:0003700|GO:0006355
Alju06g1997 359 PANTHER TRANSCRIPTION FACTOR TGA9 1 357 - -
Alju06g1997 359 SUPERFAMILY Leucine zipper domain 74 116 IPR046347 GO:0003700|GO:0006355
Alju06g1997 359 Pfam Seed dormancy control 161 236 IPR025422 GO:0006351|GO:0043565
Alju06g1997 359 ProSiteProfiles DOG1 domain profile. 144 354 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1997 Alju-ChrAlju06 45349005 45354147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1997 1 359 Calmodulin-binding Proteins AT5G65210 66.848 2.68e-180 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Alju06g1997 DOG1 2.1e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1997 06 45349005 45354147 Alju06g1997 06 45349005 45354147 CCT
Alju06g1997 06 45349005 45354147 Alju06g1997 06 45349005 45354147 ECH