Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1955 ATGGATCCTTACAGTGAAGAGTTGATAAAAGCACTCCAAGCTTTGAACTCTGCTTCATCTTCTTCCTCCATCCACACAAGTCCCATAAGGCTGAACCAGCTCAAACCATCTCAGATTCAAGAAATCCAATCCCAAATAATCCACAAGCACAGGAACACCACGCATCATGTTCATCGCCATGTCGCTTCGTCTTCTTCTTCTTTACCTTCACTCCAACGTTGTAAGCCAACAAAACTCTACAGAGGAGTCAGACAGAGACATTGGGGAAAATGGGTCGCCGAGATCCGACTGCCCAAGAACCGAACCCGACTCTGGCTCGGCACCTTCCACACGGCAGAGCAGGCCGCTTTGGCCTACGACTACGCCGCCTATAAACTCAGAGGAGACTTTGCTCGCCTCAATTTCCCTCACTTGTGCCACCGTGGAGCTCATGTGATCGGTGAATTCGGCGATTACATGCCACTTCACTCAACTGTGCATGCCAAGCTCCAAGCTTTATGTGAAAGCTTAGCAGACAAATCACAGAAACAGGGGAATGCAGAGAACACCACTCTGTCCAACTTAGCCTCGTCTTCGTTGTCGTTGGATGAATTAGAGATTACTTACTGGAATTTCTCGGATTCTAAAGTGGATGAAACAGAGGTTGTTGGTTTGGAGAAGTATCCTTCCATTGAGATTGATTGGTCTGCTATCTGA 696 0.4756 MDPYSEELIKALQALNSASSSSSIHTSPIRLNQLKPSQIQEIQSQIIHKHRNTTHHVHRHVASSSSSLPSLQRCKPTKLYRGVRQRHWGKWVAEIRLPKNRTRLWLGTFHTAEQAALAYDYAAYKLRGDFARLNFPHLCHRGAHVIGEFGDYMPLHSTVHAKLQALCESLADKSQKQGNAENTTLSNLASSSLSLDELEITYWNFSDSKVDETEVVGLEKYPSIEIDWSAI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1955 231 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Alju06g1955 231 Gene3D AP2/ERF domain 79 137 IPR036955 GO:0003700|GO:0006355
Alju06g1955 231 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Alju06g1955 231 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Alju06g1955 231 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Alju06g1955 231 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Alju06g1955 231 Pfam AP2 domain 80 128 IPR001471 GO:0003700|GO:0006355
Alju06g1955 231 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 20 231 - -
Alju06g1955 231 CDD AP2 78 138 IPR001471 GO:0003700|GO:0006355
Alju06g1955 231 FunFam Ethylene-responsive transcription factor 2 78 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1955 Alju-ChrAlju06 44485966 44486661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1955 29 231 AP2-EREBP Transcription Factor Family AT1G78080 48.193 7.06e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju06g1955 AP2 3.6e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1955 06 44485966 44486661 Alju06g1955 06 44485966 44486661 ECH