Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1927 ATGCAAAACTCCAACTCGTTTTGTCCGGCGCCGTTGACGTCCGCCGACACCAGTGTCACTCGAACCGATCGTGCTTTGGATCCGAATATGAACTTGGATCCAAGGGTTGTACTTCAGAACCTCTCGATGGTTCGAATGAGAATGGATTCTCTTCAACGTTTTCTTTCTGAATCTACTTCTACCAAAGCTTTAGTCAGCAAGGACCAGATGGATATGGTGTCGAACGAAATCGTCTCCGCTGTCCACCAGATTATCGTCAACGGCGCCGCCCTGGTCTCCTACTCTCAGAATTTCACGGCCGCCGGCGCGTCGGTATCAACAGCGTCGGGAGACTTACCGGAGCCACTAGATACGGTTTATTCGACGAGGGCAGGATTTGATTATTCTGGCGCTGAGAAAGGTAATTTGAAAAATGAGGTTATGGATGATGAAGAAGTGAAAGATGATGACGAAAATTGTGAGATCGTGGAGCTTGACGCCGTGGAATTGCTGGCGGAGCACCTTCATTTCTGCGAAATCTGCGGGAAAGGATTCAGGCGCGACGCGAATTTGCGGATGCACATGCGTGCACATGGAAACCAATTCAAAACCCCTGAAGCGTTAGCGAAGAAGCCCTCTGATAAATCCGAAGTCGCCGGTCGCAAAACGGTGCGATTCTCTTGCCCATTCGAAGGTTGCAATCGGAACAAGATTCACAAGAAATTCCGGCCTCTGAAATCGATCATTTGCTTGAAGAATCACTTCAAAAGAAGCCATTGTCCGAAAATGTATTACTGCAATCGGTGCCACAAGAAGACTTTCTCTGTGCTTTCAGATTTAAAGAGCCATTTGAAGCATTGTGGGGAATCATCAAAGTGGAAGTGCTCTTGTGGGACCACATTTTCAAGGAAGGACAAATTGTTTGGTCACATAGCTCTGTTTGATGGGCATATGCCAGCTCTTTCTGGGGATGAAGAATATAAAGGGAAGCAAATTGTAAAGGAAGACGATGAGGATATGAACACGATGTTAAGGGAAGAAGAATCGACGCTAAATGATTTGGATGAAGATTTACCAGAAGGATTCTTTGATGATTTAGATGGATTTGGTAACTACTCTTTGGATGAAGCTCTGGGCTTCTCTAATACTGCAACTTATGGACGAATTCACTGA 1152 0.4592 MQNSNSFCPAPLTSADTSVTRTDRALDPNMNLDPRVVLQNLSMVRMRMDSLQRFLSESTSTKALVSKDQMDMVSNEIVSAVHQIIVNGAALVSYSQNFTAAGASVSTASGDLPEPLDTVYSTRAGFDYSGAEKGNLKNEVMDDEEVKDDDENCEIVELDAVELLAEHLHFCEICGKGFRRDANLRMHMRAHGNQFKTPEALAKKPSDKSEVAGRKTVRFSCPFEGCNRNKIHKKFRPLKSIICLKNHFKRSHCPKMYYCNRCHKKTFSVLSDLKSHLKHCGESSKWKCSCGTTFSRKDKLFGHIALFDGHMPALSGDEEYKGKQIVKEDDEDMNTMLREEESTLNDLDEDLPEGFFDDLDGFGNYSLDEALGFSNTATYGRIH 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1927 383 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 25 340 IPR044300 GO:0010044|GO:0010447
Alju06g1927 383 SMART c2h2final6 169 191 IPR013087 -
Alju06g1927 383 SMART c2h2final6 257 279 IPR013087 -
Alju06g1927 383 SMART c2h2final6 219 252 IPR013087 -
Alju06g1927 383 Gene3D Classic Zinc Finger 255 306 - -
Alju06g1927 383 ProSiteProfiles Zinc finger C2H2 type domain profile. 169 196 IPR013087 -
Alju06g1927 383 Pfam Zinc finger, C2H2 type 170 191 IPR013087 -
Alju06g1927 383 FunFam Zinc finger 45-like 166 192 - -
Alju06g1927 383 ProSitePatterns Zinc finger C2H2 type domain signature. 171 191 IPR013087 -
Alju06g1927 383 Gene3D Classic Zinc Finger 151 220 - -
Alju06g1927 383 SUPERFAMILY beta-beta-alpha zinc fingers 166 192 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1927 Alju-ChrAlju06 43722105 43723256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1927 141 318 C2H2 Transcription Factor Family AT1G34370 60.215 2.44e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju06g1927 zf-C2H2 0.00027 CL0361