Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1904 ATGAAGAGATCACTTGAAAGCTCCGATTCTTTGGGTGCTTTGATGACTATGTGCCCATCCAGAGATGAAAACAGTCCGAGGAACAATAATAATAATAATCATGTGTATGGGAGGGATCATCAGTTCCAAGCCATGATGTTGGATGGAGTAGTGGACGAGGAAGGTTGTGTGGAAGAATCAAGCCATTTGATGATGTCGGAGAAGAAACGTCGTCTGAGTGTTGACCAAGTCAAAGCTTTAGAGAAGAACTTCGAGGTCGAAAACAAGCTTGAGCCTGAGAGGAAAGTGAAACTGGCTCAAGAACTTGGGTTACAGCCTCGTCAAGTCGCCGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGACCAAGCAGTTAGAGAGAGATTACGGCGTTCTTAAAGCCAATTATGACGCCCTCAAAGTTAACTTCGACACTCTTCAACAAGACAACGAAGCATTGCTCAAAGAGATTGAGGAATTGAAATCTAGATTACAAGAGGAGCAAACAGAGAGTGATATTTCAGTGAAGAGAGAGGAGATAACGGGGCCTGATTCCGACGAGAAGAAGGCTGACCGGAGTGAGCCACCGCCGGCTGAAACCTCCATTCTTATTGAATCACAGTGCAAGGAGGACTTGAATTATGGGTGCTTCAATGGAGTCGCCGGAGGTGCTGATGGTGCTTCACTCTTGGCGACGGTGGATCATTTCAAAGACGGAGCTTCCGATAGCGACTCTAGCGCAATCTTGAACGAAGATAACAGTCCCAACGCGGGCATTTCGTCGCCGGAAGCTCTTCAGAGCCACCACCAGCACCACCACCATCTTTTGATTTCTCCATCGTCTCCGCCGCCTTCCATGAACTGCTTTCAATTCCAGAAATCAACATACCAGAGTCAGTATGTTAAGATGGAAGAACATAACTTCTTCAGCGCCGAAGAAGCCTGCAATTTCTTCTCCGAAGATCAAGCACCCACACTCCATTGGTACTCTTCCGATAATCACTGGAGCTAG 1011 0.4728 MKRSLESSDSLGALMTMCPSRDENSPRNNNNNNHVYGRDHQFQAMMLDGVVDEEGCVEESSHLMMSEKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDALKVNFDTLQQDNEALLKEIEELKSRLQEEQTESDISVKREEITGPDSDEKKADRSEPPPAETSILIESQCKEDLNYGCFNGVAGGADGASLLATVDHFKDGASDSDSSAILNEDNSPNAGISSPEALQSHHQHHHHLLISPSSPPPSMNCFQFQKSTYQSQYVKMEEHNFFSAEEACNFFSEDQAPTLHWYSSDNHWS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1904 336 Coils Coil 136 170 - -
Alju06g1904 336 CDD homeodomain 68 124 IPR001356 GO:0003677
Alju06g1904 336 SMART HOX_1 66 127 IPR001356 GO:0003677
Alju06g1904 336 MobiDBLite consensus disorder prediction 241 279 - -
Alju06g1904 336 MobiDBLite consensus disorder prediction 243 265 - -
Alju06g1904 336 PRINTS Lambda-repressor HTH signature 94 103 IPR000047 GO:0003677
Alju06g1904 336 PRINTS Lambda-repressor HTH signature 103 119 IPR000047 GO:0003677
Alju06g1904 336 MobiDBLite consensus disorder prediction 21 35 - -
Alju06g1904 336 Pfam Homeodomain 68 121 IPR001356 GO:0003677
Alju06g1904 336 Pfam Homeobox associated leucine zipper 123 165 IPR003106 GO:0006355|GO:0043565
Alju06g1904 336 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 308 IPR045224 GO:0003700
Alju06g1904 336 MobiDBLite consensus disorder prediction 165 199 - -
Alju06g1904 336 ProSiteProfiles 'Homeobox' domain profile. 63 123 IPR001356 GO:0003677
Alju06g1904 336 Gene3D - 65 130 - -
Alju06g1904 336 SUPERFAMILY Homeodomain-like 61 125 IPR009057 -
Alju06g1904 336 MobiDBLite consensus disorder prediction 165 195 - -
Alju06g1904 336 FunFam Homeobox-leucine zipper protein HAT5 61 125 - -
Alju06g1904 336 ProSitePatterns 'Homeobox' domain signature. 98 121 IPR017970 GO:0000981|GO:0006355
Alju06g1904 336 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1904 Alju-ChrAlju06 43078602 43079977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1904 1 335 Homeobox Transcription Factor Family AT2G22430 46.893 5.63e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju06g1904 Homeodomain 2.9e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1904 06 43078602 43079977 Alju06g1904 06 43078602 43079977 CCT
Alju06g1904 06 43078602 43079977 Alju06g1904 06 43078602 43079977 ECH