Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1898 ATGGTCTTAGCCGTGAGTCTCCACCGTAGCTCCCATGCACAGCCGGCCACATCATCCACCTGGCCTGGCACAACGTTAAAAGAAGCTCTCAACAAAACTCACTTCGGTGTTATTCTCGTCGTCTTCCTCTCTTCCATTGTCTTCTTGATTTTCTTCTCCGTCTTGATTCGTCACTGTGTTGATACCTGCGCCACCACTAGGACTCACATCATCTCCGCCGCCGTCACCAACCGCTGCCCCCGTGAGGTCATCGATAAATGTCCCGTACTCATCTACTCCGATGTGAAGGACCTCAGGATCGGGAACTCGGCCCTCGAGTGTGCCGTTTGCCTGAGCGAGTTCGATGACTCGGACAAGATCCGCTTGCTTCCAAAATGCAATCACGTTTTCCATTCCGATTGTATTGATAGGTGGTTCGCTTCACGCCTTACTTGCCCTGTTTGTCGCGCCAAGCTCACTCCGTCGGATTCCACCAACAATGCCGACGCCGACGCCGTGATCGAGTCATCGAATCCCGATGAATCATCCGCTGCAGGTTCGGAACAGAGCTCTGTGGAGTCGCGGGAGCCACCGGTGGAAAGGATTGACGTGGATGATGAAAGTGGAAGCAGTAGTACGGGTCTTCCGGCGGAGACTGAACAGCCAATTAGGTCAACAACGGCGGCGGAAAGGCTTGGGAGGTCACACTCGACGGGTCACTGTCTGTTCATGGAAAGTGAAGGGGTGATGGAGAGGTACACGCTGAGATTACCTGAACACGTGAGGCAGGAGATATTTGGGAAAAATCAGAGAAGGCTTCGACGTTGTACGAGCAGCAACGACGTCGTTTTGAGGGGAGCATGGAGCTCAAAGAAAGGAAGAGATAATATGGAGAGGTGGGTGTTGCTCTGCAATATGACGCCGCCGTTTGTTTCAAAAGATTGGAGCTCTGTGAAATTTGTGAAGCAGAATTCTGATCAAACCTCGGCGCCGCTGCTTAGGCCTCCAGTTTGA 993 0.5267 MVLAVSLHRSSHAQPATSSTWPGTTLKEALNKTHFGVILVVFLSSIVFLIFFSVLIRHCVDTCATTRTHIISAAVTNRCPREVIDKCPVLIYSDVKDLRIGNSALECAVCLSEFDDSDKIRLLPKCNHVFHSDCIDRWFASRLTCPVCRAKLTPSDSTNNADADAVIESSNPDESSAAGSEQSSVESREPPVERIDVDDESGSSSTGLPAETEQPIRSTTAAERLGRSHSTGHCLFMESEGVMERYTLRLPEHVRQEIFGKNQRRLRRCTSSNDVVLRGAWSSKKGRDNMERWVLLCNMTPPFVSKDWSSVKFVKQNSDQTSAPLLRPPV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1898 330 CDD RING-H2_EL5-like 106 149 - -
Alju06g1898 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 167 IPR013083 -
Alju06g1898 330 SMART FANCL_C_2 103 157 - -
Alju06g1898 330 SMART ring_2 107 148 IPR001841 -
Alju06g1898 330 MobiDBLite consensus disorder prediction 168 226 - -
Alju06g1898 330 FunFam E3 ubiquitin-protein ligase ATL6 68 155 - -
Alju06g1898 330 MobiDBLite consensus disorder prediction 201 226 - -
Alju06g1898 330 ProSiteProfiles Zinc finger RING-type profile. 107 149 IPR001841 -
Alju06g1898 330 SUPERFAMILY RING/U-box 106 159 - -
Alju06g1898 330 Pfam Ring finger domain 106 149 IPR001841 -
Alju06g1898 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 258 - -
Alju06g1898 330 MobiDBLite consensus disorder prediction 168 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1898 Alju-ChrAlju06 42863652 42864644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1898 11 323 Rapid Response to Elicitors AT3G05200 33.828 8.06e-44 153