Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1883 ATGGGGAAAAAAGGTGGGTTTCTTCGTTATGCAGATAGGGTAGACAAGTTACTATTATTGTTTGGGACATTGGGTTGCATTGGAGATGGCCTTCAAACTTCTATCACAATGCTTGTTCTTGGCAATTTGATTGATGACTATGCAAATCATACTCCTGATTCTGAGAATGATGCCTTCAAGCATTCTGTAGACAAGTATGCTCTCAGGCTGCTTTATATTGCCATTGGGGTGGGCTTATCTGCATTTATTGAAGGACTATGTTGGACAAGAACTGGAGAAAGACAAACATCTCGCATGAGAACTGCATATCTTAAATCAATTCTAAGGCAAGAAGTCGGTTTTTTCGATAGCCAGTCCGGCTCTTCCACCACCTTCCAAGTGATTTCAACCATATCTTCTGATGCTCAAACCATTCAAGACACCTTGGCTGAAAAGATACCAACTTGTTTGGTTCACCTTTCAGCAGTTTTCTCAAGCTTCATAGTAGCTGCAATTCTTTCATGGAGATTAGCACTATCTGCTTTTCCATTTTCAGTTATGATGATAATGCCAGCAATCATATTTGGGAAGAAACTAAAGGAACTGGGAGGTCAGATGAAGGATGCTTATGGTGTTGTTGGTGGCATAGCAGAGCAAGCAATCTCATCAATTAGAACAGTTTATTCATATGTAGGTGAGAAACAAACACTAGAGAGGTTTTCATCTGCTCTTGAAACAAGCATGAAGGTTGGAATAAAACATGGTTCGACCAAAGGTGTCGTCATTGGAAGCTTTGGGTTGATCTATGCAACATGGGCGTTTGAAACATGGGTTGGAAGCATTTTGGTCTCTCAAAGAGGAGAAAGTGGTGGAAAAGTATTTGTTGCAGAAATATGTATCATCTGGGGAGGATTGTCATTGATGAGTGCACTTCCAGGACTTGCTTCTTTAGCAGAGGCAACAGTTGCAGTTACTCGAATTTACGAGATGATCGATCGAGTGCCAGCTATATACTCAGATAGAGAAAGAGGGAAGATTTTGAAGGATGTGAGGGGAGAGATCAGTTTCAAAGATGTTGATTTTAGCTACCCATCAAGGCCAGATACTCCAATTCTAAGAGGGCTCAATCTGAAATTTGGAGCAGGCAAAACAGTGGGTCTTATTGGAGGGAGTGGTTCTGGTAAATCTACAATAATCTCTCTGATTGAAAGGTTTTATGATCCTATTAGTGGAAACATATTGCTTGACGGGCATGATATAAAGAAATTTCATGTCAAGTGGTTAAGGTCCCAGATGGGACTGGTAAGTCAAGAGCCAAATCTGTTTGCAACGTCAATTAAGGATAACATCCTACTTGGAAATGAAGGAGCTTCAATGGAAGAAGTTGAAAATGCAGCAAGGGCTGCCAATGCACATGATTTCATTGTCAAACTTGTCAGTGGATACGAAACTCAAGTGGGGCAACTAGGAACCCAATTGTCTGGAGGGCAAAGGCAAAGGATTGCCATAGCAAGGGCTCTAATAAGAAACCCCAGAATCTTACTGCTTGATGAAGCTACCAGTGCTTTAGATTCACAGTCTGAAAAATTAGTACAAGAAGCCTTGGATTCAGCTTCCCGAGGAAGAACTACAATTATTGTAGCCCATCGCCTTTCAACGATTCATAAGGCTGACTTAATTGTAGCTCTTCAATCAGGAAAAGTCATTGAATCTGGTTCCCATGATGAGCTAATCCAAATGAATCATGGACAAGGTGGAACATACAGAAAAATGCTTCAATTGCAACAATCAGCACTTGAAAACAAAGAGGAATCCACTTACTACTACACAAACACAAGTCCACAAAATGTAGAAGTTCCTAGAACAGAATATTCAAGTTGGCAAAGTAGCCCAGCTATGCCATTTAGCCCTATATATTCTTTTAGCATTGCAGATTCTCCTCTTGTTCCCTCTTGGAATGACGATGATTACTACAACAAGAAGAACATCAAGAAATCTTCTGATTCAGATCAAAGTTTCTCACAATGGCGTTTGATACAGATGAATGCACCTGAATGGAAGCAAGCATTGCTTGGGTGTTTAGGAGCCATGGGGTCTGGAATATGCCAACCAATATACTCCTATTGCTTGGGAATTGTTGCATCTGTTTACTTCATAAAAGACAAACCTCGAATCAAATCCGAAATCAGGTTGTACTCGATCATCTTTTGCACGCTAGCCATTGTGAACATCATTTCAAGTTTCATTCAGCAGTACAATTTCTCTGTCATGGGAGAAAGGTTGTTGAAAAGAGTAAGAGAAAACTTGCTGGCCAAAGTTTTAACCTTTGAGATTGGATGGTTTGATCATGAAGAAAACACTAGCGCAGCAATATGCACACGGCTAGCGAATGAAGCTAACATGGTTCGGTCCCTTGTAGCCGAAAGAATGTCATCGTTGGTTCAAGTTTTCTTTATGGCATCTCTGGCTTTTATACTTGGCTTAGTTGTTTCATGGAGGGTGGCTATTGTGATGATTGCTATGCAGCCTTTGATCATTACTTGTTTCTATTCAAAAAGTGTTCTGAGGAAAAGTATGTCTGTGAAAGCTCAAAAGGCTCAAAAAGAAGGAAGTCAATTAGCAATGGAAGCTACCATCAACCATAGAACTGTTGCAGCATTCTCATCAGAGAGAAGGATACTGAATCTATTTAAGATTGCCATGAAAGAACCTCGAAAGGAAAGCATTAAGCAATCATGGATTTCAGGTTCCATCTTGTCAATCTCTCAGTTTTTGACAACTACATCTATAACTATTACTTTTTGGTATGGAGGTTGGCTTTTGAATCAAGGATTAGTGGAATCAAAGAACCTTTTGCAGGTTTTTCTGATCTTGATGGGAACTGGAAGACAAATTGCAGAAACAGCAAGTATGACTTCTGATATAGCTAGAAGTGGGAGATCTATTGGTTCAATTTTTGCCATCTTGGACAGGAAAAGTCAGATTGAACCTGAAGAATATGATCATACACATAAGAAGTCTAAAAAGCCAATTAAGGGCGACATAAAGTTGCAGAATGTCTTTTTTGCTTACCCAACAAGACCTGACCAAATGATACTAAAGGGTCTTAGTCTTGAGATTGAATCTGGAAAAACAATAGCACTAGTGGGGCAAAGTGGCTCAGGGAAATCCACCATGATTGGATTAATTGAAAGGTATTATGACCCAGAGAAGGGATCAATATTTATAGACAACCGTAACATTAAGGAATTCAATCTGAGAAAGTTGAGATCAAAGATTGCCATGGTCAGTCAGGAGCCTACTCTATTTGCAGGAACCATTCGCGACAACATCGTTTATGGGACAAAGGAAGCATCCGAGGAAGAAATAAGAAGAGCAGCCCATCTTGCAAATGCTCATGAGTTCATAAGTTCTATGAAAGATGGGTATAATACAAATTGTGGAGAAAGAGGAGTGCAACTATCAGGAGGCCAAAAGCAAAGGATAGCAATAGCAAGAGCAATACTGAAGAACCCATCAATCTTGCTGTTAGATGAAGCAACCAGTGCTCTTGATAGTGTATCAGAGAGTCTGGTGCAGGAGGCACTTGAGAAGATGATGGTTAAAAGAACATGTTTAGTTATAGCTCATCGATTGTCCACAATACAAAGTGTAGATTCTATAGCTGTGATTAAGAATGGCAAGTTAGAAGAACTAGGATCACACTGTGAGTTATTGGCCAGAGGACGAAATGGGGCATACTATTCTATGGTTAAGTTACAGAAGAGTCACTCTACATAA 3759 0.3996 MGKKGGFLRYADRVDKLLLLFGTLGCIGDGLQTSITMLVLGNLIDDYANHTPDSENDAFKHSVDKYALRLLYIAIGVGLSAFIEGLCWTRTGERQTSRMRTAYLKSILRQEVGFFDSQSGSSTTFQVISTISSDAQTIQDTLAEKIPTCLVHLSAVFSSFIVAAILSWRLALSAFPFSVMMIMPAIIFGKKLKELGGQMKDAYGVVGGIAEQAISSIRTVYSYVGEKQTLERFSSALETSMKVGIKHGSTKGVVIGSFGLIYATWAFETWVGSILVSQRGESGGKVFVAEICIIWGGLSLMSALPGLASLAEATVAVTRIYEMIDRVPAIYSDRERGKILKDVRGEISFKDVDFSYPSRPDTPILRGLNLKFGAGKTVGLIGGSGSGKSTIISLIERFYDPISGNILLDGHDIKKFHVKWLRSQMGLVSQEPNLFATSIKDNILLGNEGASMEEVENAARAANAHDFIVKLVSGYETQVGQLGTQLSGGQRQRIAIARALIRNPRILLLDEATSALDSQSEKLVQEALDSASRGRTTIIVAHRLSTIHKADLIVALQSGKVIESGSHDELIQMNHGQGGTYRKMLQLQQSALENKEESTYYYTNTSPQNVEVPRTEYSSWQSSPAMPFSPIYSFSIADSPLVPSWNDDDYYNKKNIKKSSDSDQSFSQWRLIQMNAPEWKQALLGCLGAMGSGICQPIYSYCLGIVASVYFIKDKPRIKSEIRLYSIIFCTLAIVNIISSFIQQYNFSVMGERLLKRVRENLLAKVLTFEIGWFDHEENTSAAICTRLANEANMVRSLVAERMSSLVQVFFMASLAFILGLVVSWRVAIVMIAMQPLIITCFYSKSVLRKSMSVKAQKAQKEGSQLAMEATINHRTVAAFSSERRILNLFKIAMKEPRKESIKQSWISGSILSISQFLTTTSITITFWYGGWLLNQGLVESKNLLQVFLILMGTGRQIAETASMTSDIARSGRSIGSIFAILDRKSQIEPEEYDHTHKKSKKPIKGDIKLQNVFFAYPTRPDQMILKGLSLEIESGKTIALVGQSGSGKSTMIGLIERYYDPEKGSIFIDNRNIKEFNLRKLRSKIAMVSQEPTLFAGTIRDNIVYGTKEASEEEIRRAAHLANAHEFISSMKDGYNTNCGERGVQLSGGQKQRIAIARAILKNPSILLLDEATSALDSVSESLVQEALEKMMVKRTCLVIAHRLSTIQSVDSIAVIKNGKLEELGSHCELLARGRNGAYYSMVKLQKSHST 1252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1883 1252 CDD ABC_6TM_Pgp_ABCB1_D2_like 672 988 - -
Alju06g1883 1252 Gene3D ABC transporter type 1, transmembrane domain 8 601 IPR036640 GO:0005524|GO:0016020
Alju06g1883 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 588 IPR027417 -
Alju06g1883 1252 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1001 1247 IPR027417 -
Alju06g1883 1252 PANTHER ABC TRANSPORTER B FAMILY 8 696 IPR039421 -
Alju06g1883 1252 FunFam ABC transporter B family member 4 337 596 - -
Alju06g1883 1252 SMART AAA_5 374 560 IPR003593 GO:0016887
Alju06g1883 1252 SMART AAA_5 1035 1221 IPR003593 GO:0016887
Alju06g1883 1252 FunFam ABC transporter B family member 4 998 1251 - -
Alju06g1883 1252 Pfam ABC transporter 1026 1175 IPR003439 GO:0005524
Alju06g1883 1252 SUPERFAMILY ABC transporter transmembrane region 670 989 IPR036640 GO:0005524|GO:0016020
Alju06g1883 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 20 312 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju06g1883 1252 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 683 970 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju06g1883 1252 SUPERFAMILY ABC transporter transmembrane region 7 328 IPR036640 GO:0005524|GO:0016020
Alju06g1883 1252 CDD ABC_MTABC3_MDL1_MDL2 347 588 - -
Alju06g1883 1252 Gene3D - 997 1248 IPR027417 -
Alju06g1883 1252 Gene3D - 337 589 IPR027417 -
Alju06g1883 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1008 1244 IPR003439 GO:0005524
Alju06g1883 1252 Pfam ABC transporter transmembrane region 21 285 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju06g1883 1252 Pfam ABC transporter transmembrane region 684 951 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Alju06g1883 1252 Gene3D ABC transporter type 1, transmembrane domain 975 1250 IPR036640 GO:0005524|GO:0016020
Alju06g1883 1252 CDD ABC_6TM_Pgp_ABCB1_D1_like 19 320 - -
Alju06g1883 1252 CDD ABC_MTABC3_MDL1_MDL2 1008 1247 - -
Alju06g1883 1252 Gene3D ABC transporter type 1, transmembrane domain 662 972 IPR036640 GO:0005524|GO:0016020
Alju06g1883 1252 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 347 583 IPR003439 GO:0005524
Alju06g1883 1252 ProSitePatterns ABC transporters family signature. 486 500 IPR017871 GO:0005524|GO:0016887
Alju06g1883 1252 ProSitePatterns ABC transporters family signature. 1147 1161 IPR017871 GO:0005524|GO:0016887
Alju06g1883 1252 Pfam ABC transporter 365 514 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1883 Alju-ChrAlju06 42334242 42340522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1883 684 1252 Calmodulin-binding Proteins AT2G36910 37.282 6.77e-111 376