LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju06g1862	ATGGCACTTTTGTTTATGTTTATGTTCCACTTCTTGCTTCTTCTTGTCCCTACTCTCATTTCTTCTTATATCCTTCAACATCCTGAACTTCTGATCCAACAAGTTGACAAGAGCGCCAATGCCTCGAGGAGAAATCTGGGGTTTGTATCTTGTGGAACAGGAAACCCCATTGATGATTGTTGGAGATGCGATCCCAACTGGCACCACAATCGCCGGCGTCTTGCTGACTGCGCTATCGGGTTTGGCAGACATGCTGTTGGAGGAAGAGACGGCCGAACATTCGTCGTCACTGACCCCAGCGACAACCCCATGAACCCTAAACCTGGATCTTTAAGATATGGCGTCGTCCAAGAAGAACCCTTATGGATCATCTTTGAAAGGGACATGAACATCGAGCTCAAGATGGACCTCCTCATCAATTCCCACAAAACAATCGATGGCCGAGGAGCCACTGTGCACATCGCCGGTGGACCTTGTATCAAAATACTGCGACAGACCAACATAATCATTCATGGCTTGCATATCCACGACTGCGTACAAGGTAGACCTGGGTTTGTGAGGGTATCTCCTCGTCATTATAGATTCAGTCCGAGGTCGGACGGGGATGGGGTTTCAATCTTGGGCGGGACCCATGTGTGGGTGGACCATTGCTTCTTGTCTAAGGGCTATGATGGGCTGATTGATGTGGTTCATGGATCAACGGCGGTGACCATTTCTAACAATTACATGACCCACCATGAAAAAGTTATGCTCCTCGGACACAGCGATTCGTATGAGAAGGACCGGAATATGCAGGTCACGGTCGCCTACAATCATTTCGGAGAAGGGCTTGGAGGAAGAATGCCCAGATGCAGGTTTGGATACTTTCATGTTGTGAACAACGACTACACTCATTGGAAACATTACGCAATTGGAGGGAGCTCAAATCCCACTATTTTCAGCCAAGGCAACAGATTTCTTGCTCCAGATGATGGAGAACACAAAGAGGTGACAAAACACTTTGGGGCATCGCATAGTAAGTGGAAAAGATGGAATTGGAAGTCGGAAGGAGATTTGATGTTGAATGGGGCATTCTTCAAATCATCTGGGGAAGGAACGTCTTCTGTGTATAGTAAAACATTGAGCTTGTCTGCTAGACCATCCGTATTTGTGAGCTCAATGACCTCATCAGCTGGACCTCTTGATTGCAGAAAGAGCTCATTCTGCTAA	1209	0.4715	MALLFMFMFHFLLLLVPTLISSYILQHPELLIQQVDKSANASRRNLGFVSCGTGNPIDDCWRCDPNWHHNRRRLADCAIGFGRHAVGGRDGRTFVVTDPSDNPMNPKPGSLRYGVVQEEPLWIIFERDMNIELKMDLLINSHKTIDGRGATVHIAGGPCIKILRQTNIIIHGLHIHDCVQGRPGFVRVSPRHYRFSPRSDGDGVSILGGTHVWVDHCFLSKGYDGLIDVVHGSTAVTISNNYMTHHEKVMLLGHSDSYEKDRNMQVTVAYNHFGEGLGGRMPRCRFGYFHVVNNDYTHWKHYAIGGSSNPTIFSQGNRFLAPDDGEHKEVTKHFGASHSKWKRWNWKSEGDLMLNGAFFKSSGEGTSSVYSKTLSLSARPSVFVSSMTSSAGPLDCRKSSFC	402

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju06g1862	402	PRINTS	Pollen allergen Amb family signature	77	94	IPR018082	-
	Alju06g1862	402	PRINTS	Pollen allergen Amb family signature	100	125	IPR018082	-
	Alju06g1862	402	PRINTS	Pollen allergen Amb family signature	200	221	IPR018082	-
	Alju06g1862	402	PRINTS	Pollen allergen Amb family signature	373	396	IPR018082	-
	Alju06g1862	402	PRINTS	Pollen allergen Amb family signature	280	299	IPR018082	-
	Alju06g1862	402	PRINTS	Pollen allergen Amb family signature	136	152	IPR018082	-
	Alju06g1862	402	PRINTS	Pollen allergen Amb family signature	344	368	IPR018082	-
	Alju06g1862	402	PRINTS	Pollen allergen Amb family signature	302	321	IPR018082	-
	Alju06g1862	402	PANTHER	PECTATE LYASE 18-RELATED	34	399	IPR045032	GO:0030570
	Alju06g1862	402	Gene3D	-	54	395	IPR012334	-
	Alju06g1862	402	Pfam	Pectate lyase	138	319	IPR002022	-
	Alju06g1862	402	SMART	amb_all	128	325	IPR002022	-
	Alju06g1862	402	SUPERFAMILY	Pectin lyase-like	75	400	IPR011050	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju06g1862	Alju-ChrAlju06	40784535	40787216	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju06g1862	3	402	Polysaccharide Lyase	AT5G63180	65.432	0.0	540