Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1860 ATGGCACTCGCATTCTCGTTCACATTTCTCCCCCTACTTCTCGCTCCTTGCCTCATTTTCTCTTCCCCAGTTCAAGATCCAGAATTAGTAGTCGAACAAGTACACAAGAGCATCAATGCGTCGAGGAGAAATTTGGCGTTTCTTTCTTGTAGAAGTGGGAACCCCATTGATGATTGTTGGAGGTGTGATGCTAACTGGGCCAAAAACAGAAAGCGTCTCGCAGATTGCGCCATTGGGTTCGGCAAGAACGCCATAGGAGGCAGAGACGGCAGATATTATGTTGTCACCGACCCTGGCGACCACCCCGTGAGTCCCAAGCCAGGAACCCTCCGATACGGCATCATACAGAATGAGCCACTGTGGATCATCTTCAACAATGACATGGTGATCAAGCTCAAACAAGAGCTTATGATGAACTCCTTCAAGACCATTGATGGCAGAGGAGCCAATGTTCACATTGGTGGTGGTCCTTGCATCACAATACAGTACGAGACGAACATCATAATCCACGGAATGAACATTCATGACTGCAAACGAGGAGGTAACGCCTACGTCCGAGATTCTCCAACACATTACGGGTGGAGAACGGTGTCGGACGGCGATGGAGTTTCCATTTTCGGAGGAAGCCACATCTGGGTTGACCATTGTTCTTTATGGAATTGTCAAGATGGACTTATTGATGCGATTCATGGATCCACAGCAATCACGATCTCAAACAATTACATGATTCGCCATAACAAGGTAATGCTTCTGGGTCACAGTGACAGTTACACACAGGACAAGAGCATGCAGGACACTATTGCCTTCAACCATTTCGGTAAAGGGTTAGTCCAGAGAATGCCAAGATGCCGACATGGGTACTTCCATGTGGTAAACAATGATTATACTCAGTGGCAGATGTATGCTATAGGAGGAAGTGCTAATCCAACAATAAATAGTCAAGGCAACAGATTTCTTGCTCCTAATGACGGTACCTTCAAAGAGGTGACCAAAAGGGAGATTTCGCCGGAGAGTGTATGGAAGAACTGGAACTGGAGGTCTTCAGGGGATCTGTTGCTAAACGGTGCGTTTTTCACACCGTCTGGGAAGGGATCATCTTCGAGCTATGCTCGAGCTTCAAGTCTGTCTGCAAAATCTTCTTCTTTGGTTGGTTCTATAACAGCATCAGCTGGAACACTCAAATGCACAAAGGGCTCGCGTTGTTGA 1206 0.4693 MALAFSFTFLPLLLAPCLIFSSPVQDPELVVEQVHKSINASRRNLAFLSCRSGNPIDDCWRCDANWAKNRKRLADCAIGFGKNAIGGRDGRYYVVTDPGDHPVSPKPGTLRYGIIQNEPLWIIFNNDMVIKLKQELMMNSFKTIDGRGANVHIGGGPCITIQYETNIIIHGMNIHDCKRGGNAYVRDSPTHYGWRTVSDGDGVSIFGGSHIWVDHCSLWNCQDGLIDAIHGSTAITISNNYMIRHNKVMLLGHSDSYTQDKSMQDTIAFNHFGKGLVQRMPRCRHGYFHVVNNDYTQWQMYAIGGSANPTINSQGNRFLAPNDGTFKEVTKREISPESVWKNWNWRSSGDLLLNGAFFTPSGKGSSSSYARASSLSAKSSSLVGSITASAGTLKCTKGSRC 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1860 401 PANTHER PECTATE LYASE 18-RELATED 26 399 IPR045032 GO:0030570
Alju06g1860 401 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Alju06g1860 401 PRINTS Pollen allergen Amb family signature 279 298 IPR018082 -
Alju06g1860 401 PRINTS Pollen allergen Amb family signature 301 320 IPR018082 -
Alju06g1860 401 PRINTS Pollen allergen Amb family signature 199 220 IPR018082 -
Alju06g1860 401 PRINTS Pollen allergen Amb family signature 343 367 IPR018082 -
Alju06g1860 401 PRINTS Pollen allergen Amb family signature 99 124 IPR018082 -
Alju06g1860 401 PRINTS Pollen allergen Amb family signature 135 151 IPR018082 -
Alju06g1860 401 PRINTS Pollen allergen Amb family signature 372 395 IPR018082 -
Alju06g1860 401 Gene3D - 53 394 IPR012334 -
Alju06g1860 401 FunFam Pectate lyase 53 394 - -
Alju06g1860 401 SUPERFAMILY Pectin lyase-like 39 395 IPR011050 -
Alju06g1860 401 SMART amb_all 127 324 IPR002022 -
Alju06g1860 401 Pfam Pectate lyase 133 318 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1860 Alju-ChrAlju06 40462965 40464470 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1860 3 401 Polysaccharide Lyase AT5G63180 75.495 0.0 620
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1860 06 40462965 40464470 Alju06g1860 06 40462965 40464470 ECH
Alju06g1860 06 40462965 40464470 Alju13g1648 13 34631591 34635129 ECH