Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju06g1813 ATGGACAGTGGTTTCTCTTCTCCACGATGCGACGCTTTTCCAGCTGGTCTGCGAGTTCTCGTCGTTGATGATGACCCAACATGGATCAGGATCCTTGAAAAGATGCTCAAGAAGTGCTCTTATGAAGTGACCACATGTGGTTTAGCAAGGGAGGCTCTAAACTTGCTTCGGGAAAGAAAAGATGGATATGACATTGTTATCAGTGATGTAAACATGCCAGACATGGATGGTTTTAAACTTCTGGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATAATGATGTCTGTGGATGGAGAAACTAGCAGGGTGATGAAAGGTGTCCAACATGGAGCATGTGATTATCTCCTCAAGCCGATTCGGATGAAAGAACTGCGAAACATATGGCAACATGTGTTCAGAAAGAGGATTCATGAGGCGAGAGAATTTGAAGGTCATGAAGGATTCGAGGGCATTCATTTAATGAGAAATGGATTGGATCAGTCAGAAGATGGGATGTCGTTTTCCCTTGAAGATATGTCCTCCATGAAGAAAAGAAAAGACCTCGATAACAAACATGATGACAAAGAATTTGGAGATCCATCTTCCACCAAGAAAGCTAGAGTAGTTTGGTCAGTGGATCTTCATCAGAAATTTGTCAAAGCTGTGAATCAAATTGGATTTGACAAAGTTGGCCCCAAAAGAATTCTAGATTTGATGAATGTTCCTTGGCTGACAAGAGAAAATGTTGCTAGCCATTTGCAGAAATACCGGCTCTACTTGAGTAGGTTGCAGAAAGAAAATGATCAGAGACCTTCCTCAAGTGGGACCAAGCCTTCAGATTTGCCTCCAAGAGACACTGCAGGAAATTTTGGGTTTCAGAACTTGACAAACAAGCAGCAAAATGATGTTGCAGTTGACAGCTTCAATTATTCAGACGTAACATTACAGAATCATACCTTTGAGACCAAGATTCACAACGGTGATCTCAAGGCGATTGTTTCAGATTCCATAGCAGAAAAAAGAAGAGCTTTATCTGGAAGCATTACTGATACAAAGGTAAGTCCCCAGATAAGTCTTAACCATTCTTCTTTCGGACCTCTCGAGTCAGAAGGAAGGCATGCGGTATTCGATTGCACTATCCCTTCGACTCAGTTCACCTGGAGCAAAGCTCCAGAAATGCCACTCAAGAAAGAACACAAGTCATTTCTTCAATTGGAAGATAGCTTCAGTCACTTACCATTACATGTTACACAGCGCAAGATTCAGGGGGACCAATCACATTCAATTGCTTCAGTTAGTTCGAACCCGACTATCATAGAGGGAGAGATTGCTGCCTCGGTTGAAACTAAGCCGGTGAATGCTGATCACAAAAGTGATTATGCCAGTCCTGTGAGTTCAATAGGCAGTGTAGTGGACAACTTTCCTACTCAGTCCAAGAGCCTTATGGAGAATGGTCAGCCTTCAGAACCTTCGACTAAGAACTTGGCCATGAAAACTCACGGCTTCAATTCTGACCTCGAATTTTACCCCGAAAACCTATTGGACGAGGACTTACATTTCTATTGGCTGCAAGGTGAATACTATAATATGAACTGGGGATTGGAGAACATAGGAATGCCAGAGTATTATGATCCAGGTCTTGTTGCAGAACTTTCAAGTCACTTGCATGATTCTGCTGATTGTACTCTTGTAGATCAAGGTCTATTCATAGCATAA 1698 0.4234 MDSGFSSPRCDAFPAGLRVLVVDDDPTWIRILEKMLKKCSYEVTTCGLAREALNLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEAREFEGHEGFEGIHLMRNGLDQSEDGMSFSLEDMSSMKKRKDLDNKHDDKEFGDPSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKRILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDQRPSSSGTKPSDLPPRDTAGNFGFQNLTNKQQNDVAVDSFNYSDVTLQNHTFETKIHNGDLKAIVSDSIAEKRRALSGSITDTKVSPQISLNHSSFGPLESEGRHAVFDCTIPSTQFTWSKAPEMPLKKEHKSFLQLEDSFSHLPLHVTQRKIQGDQSHSIASVSSNPTIIEGEIAASVETKPVNADHKSDYASPVSSIGSVVDNFPTQSKSLMENGQPSEPSTKNLAMKTHGFNSDLEFYPENLLDEDLHFYWLQGEYYNMNWGLENIGMPEYYDPGLVAELSSHLHDSADCTLVDQGLFIA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju06g1813 565 SMART REC_2 17 129 IPR001789 GO:0000160
Alju06g1813 565 FunFam Two-component response regulator 17 186 - -
Alju06g1813 565 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 317 IPR045279 GO:0009736
Alju06g1813 565 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Alju06g1813 565 Gene3D - 17 174 - -
Alju06g1813 565 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Alju06g1813 565 MobiDBLite consensus disorder prediction 258 287 - -
Alju06g1813 565 MobiDBLite consensus disorder prediction 175 195 - -
Alju06g1813 565 FunFam Two-component response regulator 195 258 - -
Alju06g1813 565 PIRSF RR_ARR_type-B 2 527 IPR017053 GO:0003677|GO:0003700|GO:0009736
Alju06g1813 565 MobiDBLite consensus disorder prediction 259 274 - -
Alju06g1813 565 CDD REC_typeB_ARR-like 19 133 - -
Alju06g1813 565 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Alju06g1813 565 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Alju06g1813 565 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Alju06g1813 565 SUPERFAMILY CheY-like 16 141 IPR011006 -
Alju06g1813 565 Gene3D - 195 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju06g1813 Alju-ChrAlju06 38384630 38388603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju06g1813 11 264 Response Regulator Gene Family AT2G25180 55.253 3.86e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Alju06g1813 Response_reg 2.1e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju06g1813 06 38384630 38388603 Alju06g1813 06 38384630 38388603 ECH